##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3224498_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 891035 Sequences flagged as poor quality 0 Sequence length 101 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.961442592041838 33.0 31.0 34.0 30.0 34.0 2 32.13307894751609 34.0 31.0 34.0 30.0 34.0 3 32.26967178618124 34.0 31.0 34.0 30.0 34.0 4 35.595727440560694 37.0 35.0 37.0 35.0 37.0 5 35.600439937825115 37.0 35.0 37.0 35.0 37.0 6 35.702563872350694 37.0 37.0 37.0 35.0 37.0 7 35.65269041058993 37.0 37.0 37.0 35.0 37.0 8 35.69434309538907 37.0 37.0 37.0 35.0 37.0 9 37.390917304034076 39.0 38.0 39.0 35.0 39.0 10-11 37.4461373571184 39.0 38.0 39.0 35.0 39.0 12-13 37.41939991133906 39.0 38.0 39.0 35.0 39.0 14-15 38.83374558799598 41.0 39.0 41.0 35.0 41.0 16-17 38.673218784896214 41.0 39.0 41.0 34.5 41.0 18-19 38.75424758847857 41.0 39.0 41.0 35.0 41.0 20-21 38.80936663542958 41.0 39.0 41.0 35.0 41.0 22-23 38.754663397060725 41.0 39.0 41.0 35.0 41.0 24-25 38.66131408979445 41.0 39.0 41.0 35.0 41.0 26-27 38.45416790586228 41.0 39.0 41.0 34.0 41.0 28-29 38.37097364301066 40.0 38.5 41.0 34.0 41.0 30-31 38.263409405915596 40.0 38.0 41.0 34.0 41.0 32-33 38.05322798767725 40.0 38.0 41.0 33.0 41.0 34-35 38.019778684339 40.0 38.0 41.0 33.0 41.0 36-37 37.984820461598034 40.0 38.0 41.0 33.0 41.0 38-39 37.8358308035038 40.0 38.0 41.0 33.0 41.0 40-41 37.69836818980174 40.0 38.0 41.0 32.5 41.0 42-43 37.50663722524929 40.0 37.0 41.0 32.0 41.0 44-45 37.266469891755094 40.0 37.0 41.0 31.0 41.0 46-47 37.017037490109814 40.0 36.0 41.0 31.0 41.0 48-49 36.74018136212382 39.5 35.5 41.0 30.0 41.0 50-51 35.38937527706544 38.0 34.0 40.0 28.0 40.5 52-53 35.6892260124462 38.5 35.0 39.5 28.5 40.5 54-55 36.070667818884786 38.5 35.0 40.5 29.0 41.0 56-57 35.85899375445409 37.5 35.0 41.0 29.0 41.0 58-59 35.66634700095956 37.0 35.0 40.0 29.0 41.0 60-61 35.37243710965338 36.5 35.0 40.0 28.5 41.0 62-63 35.08632433069408 36.0 35.0 40.0 28.0 41.0 64-65 34.81443658217691 35.0 34.0 39.5 28.0 41.0 66-67 34.578937415477505 35.0 34.0 39.0 28.0 41.0 68-69 34.28706279775766 35.0 34.0 39.0 27.0 41.0 70-71 34.03067780726907 35.0 34.0 38.5 26.5 41.0 72-73 33.730698008495736 35.0 34.0 37.0 26.0 40.0 74-75 33.508292603545314 35.0 34.0 37.0 26.0 39.5 76-77 33.23434096303737 35.0 33.0 36.0 26.0 39.0 78-79 33.06514727255383 35.0 33.0 36.0 26.0 39.0 80-81 32.82710499587559 35.0 33.0 35.5 25.5 37.5 82-83 32.59858647527875 35.0 33.0 35.0 25.0 37.0 84-85 32.4063959328197 35.0 33.0 35.0 25.0 37.0 86-87 32.21654761036323 35.0 33.0 35.0 25.0 36.0 88-89 32.097112908022694 35.0 33.0 35.0 24.5 36.0 90-91 31.91856941646512 35.0 33.0 35.0 24.0 36.0 92-93 31.78850886889965 35.0 32.5 35.0 24.0 35.5 94-95 31.650610806533976 35.0 32.0 35.0 24.0 35.0 96-97 31.526067438428342 35.0 32.0 35.0 23.0 35.0 98-99 31.491982918740568 35.0 32.0 35.0 23.0 35.0 100-101 30.227562329201433 34.0 29.5 35.0 20.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 6 3.0 7 175.0 8 610.0 9 493.0 10 568.0 11 1279.0 12 2151.0 13 2615.0 14 2561.0 15 2609.0 16 2824.0 17 3106.0 18 3456.0 19 3960.0 20 4737.0 21 6461.0 22 7084.0 23 6666.0 24 6066.0 25 6257.0 26 6410.0 27 6596.0 28 7322.0 29 8343.0 30 10157.0 31 13026.0 32 17197.0 33 24813.0 34 41286.0 35 73576.0 36 157224.0 37 227937.0 38 184024.0 39 49437.0 40 6.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.5206532612483 20.11475907338511 13.666220818487337 23.698366846879253 2 16.16670501158765 20.115034762944216 37.734320200665515 25.983940024802614 3 18.323073728865868 28.10013074682813 28.95666275735521 24.620132766950793 4 12.685696970377144 17.430067281307693 39.335491871811996 30.548743876503163 5 13.14942735133861 40.29606019965546 33.526741373795645 13.027771075210289 6 27.910463674266445 38.79847592967728 19.531780457557783 13.759279938498487 7 25.187226091006526 32.22050761193444 23.768202146941476 18.824064150117557 8 26.64878484010168 33.40665630418558 20.90176031244564 19.0427985432671 9 27.17199661068308 14.23771232330941 21.332607585560613 37.25768348044689 10-11 26.605015515664366 24.675068880571473 27.114310885655446 21.60560471810872 12-13 26.55726206041289 22.6620727580847 27.99239087129013 22.78827431021228 14-15 23.91384401208025 24.601273141651042 24.68474587688473 26.800136969383974 16-17 23.528189577717878 26.91071428571429 26.022742587601076 23.538353548966757 18-19 23.442976104678706 26.37595110922517 26.71665532856909 23.464417457527038 20-21 25.47960708539684 24.055016577277733 25.988096694985952 24.47727964233948 22-23 25.518690838361618 25.700618666918224 25.155115934070256 23.62557456064991 24-25 24.09496484924406 25.506383036042013 25.725549093758172 24.673103020955757 26-27 23.6917180582132 26.439589915098733 26.47943122324039 23.389260803447677 28-29 23.687060553176924 26.6602883163961 26.16356259855112 23.48908853187585 30-31 23.75540803672134 25.249906008181494 26.731553754903004 24.263132200194157 32-33 23.989854495053507 25.40652162934116 26.759835472231728 23.843788403373605 34-35 24.42047731009444 25.161918443158797 26.20879090046968 24.208813346277083 36-37 23.823031856914977 25.03325561528782 27.334544193204742 23.809168334592464 38-39 23.84027358454566 25.49181468620158 25.916737187789707 24.751174541463055 40-41 24.574077347632237 24.995019515083154 26.615486923070446 23.815416214214164 42-43 24.536688647475966 25.520241480261884 26.430786825431298 23.512283046830852 44-45 24.193845286987596 25.186519209766907 25.863454581576267 24.756180921669227 46-47 24.428613915278298 24.900368672386605 25.617231646343857 25.053785765991233 48-49 24.008765087791165 25.361237212904093 25.87984759296773 24.750150106337014 50-51 24.040357561711943 25.922214054442307 25.380989523419395 24.65643886042636 52-53 24.864511495059116 25.693435162479588 24.63735992413317 24.804693418328124 54-55 24.05012148793257 25.04542470273334 25.460391567110157 25.44406224222393 56-57 24.273345042562863 25.836358841122966 25.12224547857267 24.768050637741503 58-59 25.12265892904247 25.352262076474517 25.410967745556384 24.11411124892663 60-61 24.506898067104405 25.758153166779945 25.310274109840375 24.424674656275275 62-63 24.200511353909107 25.53396069142233 25.84936108826889 24.41616686639967 64-65 25.452257963462305 24.97219616343547 24.712993107567865 24.86255276553436 66-67 24.15030166970675 25.16166690051915 24.821158972919882 25.866872456854217 68-69 24.06212999489358 25.691583383368776 26.25957453972066 23.986712082016982 70-71 24.99329431503813 24.868383396836265 25.61930788352871 24.519014404596902 72-73 24.904689490311828 25.019555909700518 25.790344935945274 24.28540966404238 74-75 24.472271010678593 24.899751412683003 25.891407183780657 24.736570392857743 76-77 24.55144859629532 24.454202135718575 24.894308304387593 26.100040963598513 78-79 24.506121184467293 23.957282758705844 25.84266257633591 25.693933480490955 80-81 24.000406502010893 25.515019519395594 25.56701135117563 24.917562627417887 82-83 24.08815634861686 25.755572510426965 25.584620247372698 24.57165089358348 84-85 23.945893789225348 24.753512845397758 26.350115322028838 24.95047804334806 86-87 24.126659008194114 26.137850260017498 25.308444420488325 24.427046311300067 88-89 24.354975963859342 25.340053573313035 24.984507298409643 25.320463164417976 90-91 23.94069817683929 24.93061439786316 25.648431318635073 25.480256106662473 92-93 23.867762213510424 24.974438861460314 26.170621581793963 24.987177343235306 94-95 24.599763196731892 24.634610312726213 25.93371753073673 24.831908959805173 96-97 24.439949048017194 25.649665838042278 25.813351888534118 24.09703322540641 98-99 23.106849616398137 26.327455478391254 25.786563385213483 24.779131519997126 100-101 24.412300015831438 24.99418952587654 25.440894285300452 25.15261617299157 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 5.0 1 2.5 2 1.5 3 2.5 4 5.5 5 6.0 6 4.5 7 15.5 8 28.5 9 38.0 10 43.5 11 46.0 12 45.5 13 59.5 14 71.5 15 76.5 16 99.0 17 116.0 18 129.0 19 147.5 20 179.0 21 229.5 22 288.5 23 374.5 24 552.0 25 838.0 26 1275.5 27 1908.5 28 2693.0 29 3856.0 30 5547.5 31 7374.0 32 8988.5 33 10850.0 34 12655.0 35 14272.5 36 16293.0 37 17479.0 38 18003.0 39 18892.0 40 19463.5 41 19690.0 42 20058.0 43 21075.5 44 22579.5 45 26007.0 46 30438.5 47 31626.0 48 34420.5 49 39945.0 50 45035.5 51 44421.0 52 41740.5 53 44226.5 54 46940.5 55 46973.5 56 39512.0 57 31734.5 58 29294.5 59 27200.0 60 22574.0 61 17003.5 62 13681.5 63 9940.5 64 6020.0 65 3967.0 66 3278.0 67 2727.5 68 2081.5 69 1354.0 70 719.0 71 428.5 72 306.5 73 261.0 74 210.0 75 162.5 76 114.0 77 77.5 78 52.5 79 38.5 80 31.5 81 22.0 82 16.5 83 13.0 84 8.0 85 6.5 86 7.0 87 9.0 88 7.0 89 3.0 90 3.5 91 5.5 92 5.5 93 4.5 94 5.0 95 5.5 96 4.5 97 2.5 98 1.5 99 2.0 100 1.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.15094805479021586 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.03647443703109306 16-17 0.0712654385069049 18-19 0.026149365625368255 20-21 0.040177995252711735 22-23 0.06419500917472377 24-25 0.017732187848962164 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.023343639699899554 38-39 0.005499222813918646 40-41 0.006453169628578002 42-43 0.0034229856290718093 44-45 0.01212073599802477 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.01683435555281218 60-61 0.019022821774677765 62-63 0.029460122217421312 64-65 0.047192310066383476 66-67 0.017956645922999656 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.017227157182377797 80-81 0.05729292339807079 82-83 0.0488757456216647 84-85 0.0301334964395338 86-87 0.05813464117571139 88-89 0.03288310784649313 90-91 0.0 92-93 0.003815787258637427 94-95 0.0 96-97 0.0 98-99 7.85603259131235E-4 100-101 0.045116072881536635 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 891035.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.9596299800187 #Duplication Level Percentage of deduplicated Percentage of total 1 72.99088821747989 31.356615497358426 2 14.644370326033076 12.582334609934934 3 5.350541233760647 6.895718147855705 4 2.3960766863171266 4.117382713917324 5 1.2951524401673875 2.7819634798654636 6 0.7656688432855018 1.9735710116864449 7 0.5042057880169943 1.5162345860895674 8 0.33346886298156336 1.146055917083641 9 0.23499746570687044 0.9085863755708359 >10 1.1846186670484684 9.311706186775252 >50 0.12593098471498856 3.849698235269478 >100 0.15027008387428997 13.793276748434547 >500 0.01772552045645009 5.164892376083753 >1k 0.006084880156691822 4.601964114074624 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTCTAATGTTATTAAATATGTTAAATAAACTTGATGGCGGTGCCAGCGTC 3854 0.4325307086702542 No Hit GCCCATAATAAATCCGCTACCGACGCTGACTAACATTTCGCGATCGTTCA 3565 0.4000965169718361 No Hit TAATAAATCCGCTACCGACGCTGACTAACATTTCGCGATCGTTCATCGCA 3104 0.34835893090619335 No Hit ACCAAAGGCCGTGCAATCGCGCAACGATAAACCTAAATGTTGGGTCAGCA 2848 0.3196282974293939 No Hit ATACAAAACCGTGCGCGGCTTAACCCGCGGTCTAATGTTATTAAATATGT 2197 0.24656719433018906 No Hit CCTTTATTGCAGCCCACCGGCAGCACTTCGAGGCAATCCGTGGCGGAAAA 1944 0.21817324796444582 No Hit TCGCACCACTGTGCGGCGACTGCTGGAGACGCTGCAGGAAGAGGGATATG 1817 0.20392016026306486 No Hit GTATAGCTGGATCTGCAAGCGTGTAAGATCGTCGTGATCGCCACAGAAGC 1746 0.19595189863473375 No Hit GACTAACATTTCGCGATCGTTCATCGCATCACCAAAGGCCGTGCAATCGC 1734 0.19460515019050878 No Hit ATCTTACACGCTTGCAGATCCAGCTATACGAAGCATTAGGCGAGCGTGCA 1606 0.18023983345210906 No Hit GTGTAAGATCGTCGTGATCGCCACAGAAGCAGATCTTGGTGACGCTGCCG 1600 0.1795664592299966 No Hit ATGTAAAAGTTCACCTTCCAGAGAATGCACGCGCGTTCCGTTGCCGGTAA 1569 0.1760873590824154 No Hit GTACATGGGGGGAATTCCTTCGATTCTGTTTTGCTACCCGTTGTAGCGCC 1462 0.16407885212140938 No Hit CGCCTAATGCTTCGTATAGCTGGATCTGCAAGCGTGTAAGATCGTCGTGA 1421 0.1594774616036407 No Hit ATATACACCAGATTCAGACAGCCAATCACCCGTTGTTCACTGCGCAGCGG 1326 0.14881570308685968 No Hit CCTAAATGTTGGGTCAGCACCGTCAATGCAGCGCCTTTATTGCAGCCCAC 1220 0.1369194251628724 No Hit GGTCAGCACCGTCAATGCAGCGCCTTTATTGCAGCCCACCGGCAGCACTT 1140 0.12794110220137256 No Hit GCTATAGACAAATGCCTGCAACAACGCAGGGATCTCTTTCCCGGTAAACC 1139 0.12782887316435382 No Hit TCCTTTCACCGGGCAATGGTCGGGCGACGTTTGCCGCTTCTGAAAACCGC 1087 0.12199296323937893 No Hit ACCTAAATGTTGGGTCAGCACCGTCAATGCAGCGCCTTTATTGCAGCCCA 1062 0.11918723731391023 No Hit GTCTTGTTCCGGGCAAAAGGCCAGCCAGGTCAGGCCCGAGGCGGTTTTCA 1038 0.11649374042546029 No Hit GCATTAGGCGAGCGTGCACATTTGTGTTTTTCCGCCACGGATTGCCTCGA 1007 0.11301464027787911 No Hit CTTTATTGGTGCCCGACCATCATTTAGGTGAGAAAACCCTCTCTACTTTG 1005 0.1127901822038416 No Hit GTATCAACGCAGAGTACATGGGGGGAATTCCTTCGATTCTGTTTTGCTAC 988 0.11088228857452288 No Hit CCGGTAAATGCGGGAGCTCCGCGCGCAGTTGCGGCATCGCATTGCCCATA 988 0.11088228857452288 No Hit TCATTTAGGTGAGAAAACCCTCTCTACTTTGGCGCGACTGCGTGAACGCG 980 0.10998445627837292 No Hit GTACATGGGGGGAATTCGTGGAGAAAGAAATGGCTCGTCTGGCAGCATTT 975 0.10942331109327916 No Hit GAACAAGACCGCAAGGAATTAATCGAAATGTTAGCCTCCCGCCCCGGTGA 932 0.10459746250147302 No Hit GGTAAATCATCACGATGTAAAAGTTCACCTTCCAGAGAATGCACGCGCGT 928 0.104148546353398 No Hit CGTCAATGCAGCGCCTTTATTGCAGCCCACCGGCAGCACTTCGAGGCAAT 924 0.10369963020532302 No Hit GTCTATAGCGGTTTTCGTTATCAGATAATCGATGTCAAAAAAATGCCACT 911 0.1022406527240793 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10-11 0.0 0.0 0.0 0.0 0.0 12-13 0.0 0.0 0.0 1.683435555281218E-4 1.1222903701874786E-4 14-15 0.0 0.0 0.0 2.805725925468696E-4 1.683435555281218E-4 16-17 0.0 0.0 0.0 3.366871110562436E-4 2.2445807403749572E-4 18-19 0.0 0.0 0.0 3.366871110562436E-4 2.2445807403749572E-4 20-21 0.0 0.0 0.0 3.366871110562436E-4 2.2445807403749572E-4 22-23 0.0 0.0 0.0 4.4891614807499145E-4 2.2445807403749572E-4 24-25 0.0 0.0 0.0 4.4891614807499145E-4 2.2445807403749572E-4 26-27 0.0 0.0 0.0 7.294887406218611E-4 3.366871110562436E-4 28-29 0.0 0.0 0.0 0.0012906339257156003 3.366871110562436E-4 30-31 0.0 0.0 0.0 0.0029179549624874443 3.366871110562436E-4 32-33 0.0 0.0 0.0 0.0068459712581436195 3.366871110562436E-4 34-35 0.0 0.0 0.0 0.011447361775912282 5.611451850937393E-4 36-37 0.0 0.0 0.0 0.020313455700393362 5.611451850937393E-4 38-39 0.0 0.0 0.0 0.04505995836302727 7.294887406218611E-4 40-41 0.0 0.0 0.0 0.0738467063583361 7.85603259131235E-4 42-43 0.0 0.0 0.0 0.09954715583562934 7.85603259131235E-4 44-45 0.0 0.0 0.0 0.1242375439797539 7.85603259131235E-4 46-47 0.0 0.0 0.0 0.15813071315941574 7.85603259131235E-4 48-49 0.0 0.0 0.0 0.19729864707895872 7.85603259131235E-4 50-51 0.0 0.0 0.0 0.23450257285067366 7.85603259131235E-4 52-53 0.0 0.0 0.0 0.27456833906636663 7.85603259131235E-4 54-55 0.0 0.0 0.0 0.31547582305970023 7.85603259131235E-4 56-57 0.0 0.0 0.0 0.3631170492741587 7.85603259131235E-4 58-59 0.0 0.0 0.0 0.4190632242280045 8.417177776406089E-4 60-61 0.0 0.0 0.0 0.4877473948834782 8.978322961499829E-4 62-63 0.0 0.0 0.0 0.5590689479088924 8.978322961499829E-4 64-65 0.0 0.0 0.0 0.6218610941208819 0.0011222903701874785 66-67 0.0 0.0 0.0 0.6941927084794649 0.0012345194072062265 68-69 0.0 0.0 0.0 0.7840881671314819 0.0013467484442249743 70-71 0.0 0.0 0.0 0.8785289017827582 0.0014028629627343484 72-73 0.0 0.0 0.0 0.990140679097903 0.0014589774812437221 74-75 0.0 0.0 0.0 1.1004057079688228 0.0014589774812437221 76-77 0.0 0.0 0.0 1.2059571172849552 0.0014589774812437221 78-79 0.0 0.0 0.0 1.3304752338572559 0.0014589774812437221 80-81 0.0 0.0 0.0 1.478785906277531 0.001515091999753096 82-83 0.0 0.0 0.0 1.6380950243256438 0.001683435555281218 84-85 0.0 0.0 0.0 1.807560870223953 0.001683435555281218 86-87 0.0 0.0 0.0 1.9812914195289748 0.001683435555281218 88-89 0.0 0.0 0.0 2.1798245860151395 0.001683435555281218 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 795 0.0 65.78945 1 AAACCGT 520 0.0 65.73201 6 CCGTGCG 530 0.0 64.55337 9 ACCGTGC 555 0.0 61.593666 8 AACCGTG 575 0.0 60.270226 7 GTATCAA 1640 0.0 51.316864 1 TATCACG 65 4.4376065E-8 51.124897 2 ATCACGC 75 1.3684075E-7 44.308247 3 CGTGCGC 515 0.0 34.145226 10-11 CAAAACC 1015 0.0 34.14323 4 ATACAAA 1045 0.0 32.760227 1 ATCAACG 2535 0.0 32.585102 3 GTCTAAT 1125 0.0 32.54385 1 GCCCATA 1215 0.0 32.089893 1 TGCGCGG 510 0.0 31.687868 12-13 TATGTCG 60 0.0039614406 31.648746 5 GTGCGCG 520 0.0 31.53198 10-11 CCCATAA 1250 0.0 31.522152 2 CCATAAT 1260 0.0 31.271976 3 TCAACGC 2655 0.0 31.112328 4 >>END_MODULE