##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3224495_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 743470 Sequences flagged as poor quality 0 Sequence length 101 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.146083903856244 34.0 33.0 34.0 31.0 34.0 2 33.28002609385718 34.0 34.0 34.0 31.0 34.0 3 33.39707452889827 34.0 34.0 34.0 31.0 34.0 4 36.61272680807564 37.0 37.0 37.0 35.0 37.0 5 36.64624934429096 37.0 37.0 37.0 35.0 37.0 6 36.68563223801902 37.0 37.0 37.0 36.0 37.0 7 36.660552544151074 37.0 37.0 37.0 35.0 37.0 8 36.64899592451612 37.0 37.0 37.0 35.0 37.0 9 38.49040714487471 39.0 39.0 39.0 37.0 39.0 10-11 38.51347263507606 39.0 39.0 39.0 37.5 39.0 12-13 38.50624773023794 39.0 39.0 39.0 37.0 39.0 14-15 40.11358494626548 41.0 40.0 41.0 38.0 41.0 16-17 40.1148318022247 41.0 40.0 41.0 38.0 41.0 18-19 40.099139844243886 41.0 40.0 41.0 38.0 41.0 20-21 40.09587609452971 41.0 40.0 41.0 38.0 41.0 22-23 40.01813186813187 41.0 40.0 41.0 38.0 41.0 24-25 39.98216404158877 41.0 40.0 41.0 38.0 41.0 26-27 39.920152797019384 41.0 40.0 41.0 38.0 41.0 28-29 39.88693155070144 41.0 40.0 41.0 38.0 41.0 30-31 39.82768033679906 41.0 40.0 41.0 38.0 41.0 32-33 39.78292869920777 41.0 40.0 41.0 37.5 41.0 34-35 39.699235342380994 41.0 40.0 41.0 37.0 41.0 36-37 39.58884084092162 41.0 40.0 41.0 37.0 41.0 38-39 39.4817390076264 41.0 40.0 41.0 36.5 41.0 40-41 39.3426500060527 41.0 39.0 41.0 36.0 41.0 42-43 39.240132083338935 41.0 39.0 41.0 35.0 41.0 44-45 39.003396909088465 41.0 39.0 41.0 35.0 41.0 46-47 38.77541393734784 40.0 38.0 41.0 35.0 41.0 48-49 38.67305540236997 40.0 38.0 41.0 35.0 41.0 50-51 38.50912007209437 40.0 37.5 41.0 35.0 41.0 52-53 38.25700633515811 40.0 37.0 41.0 35.0 41.0 54-55 38.04957093090508 40.0 36.5 41.0 34.5 41.0 56-57 37.80903936944328 39.5 36.0 41.0 34.0 41.0 58-59 37.5277032025502 39.0 35.0 41.0 34.0 41.0 60-61 37.248355683484206 39.0 35.0 41.0 34.0 41.0 62-63 36.9894757017768 38.0 35.0 41.0 33.0 41.0 64-65 36.70368205845562 37.0 35.0 40.0 33.0 41.0 66-67 36.39138095686444 37.0 35.0 40.0 33.0 41.0 68-69 36.100836617482884 36.0 35.0 39.5 33.0 41.0 70-71 35.78602566344304 36.0 35.0 39.0 32.5 41.0 72-73 35.462114140449515 35.0 35.0 39.0 32.0 40.5 74-75 35.14107495931242 35.0 35.0 37.5 32.0 40.0 76-77 33.323456225537015 34.5 32.0 35.5 28.5 38.5 78-79 34.62981626696437 35.0 34.5 36.5 32.0 39.0 80-81 34.572297469971886 35.0 35.0 36.0 32.0 38.0 82-83 34.386671957173796 35.0 35.0 36.0 32.0 37.0 84-85 34.20140557117301 35.0 35.0 35.5 32.0 37.0 86-87 34.02258934455997 35.0 35.0 35.0 32.0 36.5 88-89 33.883121713048276 35.0 34.0 35.0 31.5 36.0 90-91 33.75475002353828 35.0 34.0 35.0 31.0 36.0 92-93 33.67668433158029 35.0 34.0 35.0 31.0 36.0 94-95 33.5858978842455 35.0 34.0 35.0 31.0 35.5 96-97 33.53521056666712 35.0 34.0 35.0 31.0 35.0 98-99 33.499912572128 35.0 34.0 35.0 31.0 35.0 100-101 32.62523370142709 34.5 33.0 35.0 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 0.0 13 2.0 14 16.0 15 43.0 16 107.0 17 203.0 18 388.0 19 563.0 20 836.0 21 1222.0 22 1733.0 23 1758.0 24 1684.0 25 2057.0 26 2635.0 27 3455.0 28 4388.0 29 4961.0 30 5632.0 31 6475.0 32 8178.0 33 11298.0 34 19123.0 35 38006.0 36 101741.0 37 219685.0 38 244548.0 39 62715.0 40 17.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.638063907487954 18.050716195285194 12.673642553812636 24.637577343414222 2 16.3347545966885 19.290354688151506 38.5663174035267 25.80857331163329 3 20.025421335090858 25.043377674956623 27.929842495325975 27.001358494626547 4 12.96905053331002 16.248268255612196 37.93952681345582 32.84315439762196 5 14.178379759775108 37.38819320214669 34.48316677202846 13.95026026604974 6 31.875798619984668 35.60062948067844 18.540627059598908 13.982944839737984 7 28.33066566236701 30.318775471774245 21.84163449769325 19.508924368165495 8 26.811841769002108 33.84023565174116 19.883115660349443 19.464806918907286 9 26.976878690464982 15.118969158136844 19.461040795190122 38.44311135620806 10-11 26.66038979380473 24.331311283575666 27.484632870189785 21.52366605242982 12-13 27.109029281611903 22.26041400460005 27.292426056195946 23.338130657592103 14-15 23.985634928107388 24.137221407723246 24.54308849045691 27.334055173712457 16-17 24.056855017687333 26.67599230634726 25.562161216995978 23.704991458969427 18-19 23.813536524674834 26.13232544689093 26.55930972332441 23.49482830510982 20-21 24.913781740021683 24.97390586203464 26.229518119285185 23.882794278658494 22-23 24.8641152663018 25.408999261561803 25.609077006056808 24.117808466079595 24-25 24.475582322024835 25.139834626261404 26.021581306513063 24.363001745200698 26-27 24.378203808993465 26.09788674707546 25.88361573257686 23.640293711354214 28-29 24.106669069910865 26.00904310303663 26.26151825400722 23.622769573045286 30-31 24.269902160433215 25.261748414848373 26.265565691319797 24.202783733398615 32-33 24.0680836296922 25.686915912991548 26.383112655823787 23.861887801492465 34-35 24.780582879478967 25.31417841487019 25.870169628769773 24.03506907688107 36-37 23.99854193974472 25.364128355034982 26.34065210534351 24.296677599876794 38-39 24.1380956864433 25.532704749351016 25.831304558354738 24.497895005850943 40-41 24.468909303670625 25.440098457234324 26.143892826879362 23.947099412215692 42-43 24.315507014405423 25.546894965499618 26.291847687196523 23.845750332898437 44-45 24.547201422644065 25.17182771963312 26.122723228067628 24.15824762965519 46-47 24.29227758064603 25.236109391069306 25.797508601704727 24.67410442657994 48-49 23.972410193916847 25.266018618276902 26.22369909464223 24.53787209316402 50-51 24.278518299326134 25.46417474814048 25.857734676584126 24.399572275949268 52-53 24.420554965230608 25.73755497868105 25.536807134114355 24.305082921973987 54-55 24.402598625364842 25.127644693128172 25.867957012387855 24.60179966911913 56-57 24.52522833967797 25.350546804589662 25.616618016975828 24.50760683875654 58-59 24.693500109998865 25.450709408569416 25.790528526035416 24.065261955396302 60-61 24.449265564087817 25.785814472104217 25.537784684311966 24.227135279496004 62-63 24.12430898355011 25.400217897157923 26.023914885603993 24.451558233687976 64-65 24.407911549894415 25.20525374258544 25.676355468277134 24.710479239243007 66-67 24.161970220721752 25.39967987948404 25.576418685353815 24.861931214440393 68-69 24.422774288135365 25.34796293058227 25.990423285404923 24.23883949587744 70-71 24.655265175461015 25.19207230957537 25.825386363942055 24.32727615102156 72-73 24.24549746459171 25.295909720634324 25.93332615976435 24.525266655009617 74-75 24.479871413775943 25.117624113952143 25.90319717002704 24.49930730224488 76-77 24.46510739548628 24.704391721488648 25.783457772839952 25.04704311018512 78-79 24.42282315244894 24.638184134312073 25.786417326806593 25.152575386432392 80-81 24.012157237006264 25.39642506209432 25.776826326242507 24.814591374656906 82-83 23.945710815467617 25.526152612840182 26.063166559734647 24.464970011957554 84-85 24.25500491294239 25.073156099749205 26.092263780282188 24.579575207026213 86-87 23.95342111988379 25.812339435350452 25.81671082895073 24.41752861581503 88-89 24.450347693921746 25.073573916903168 25.339825413264826 25.136252975910256 90-91 24.327746916486205 25.213727520949064 25.511587555651204 24.946938006913527 92-93 24.262781282365125 25.29066404831399 26.009590165036922 24.436964504283964 94-95 24.25262619877063 25.097717460018558 25.789137423164348 24.86051891804646 96-97 24.41463677081792 25.532166731677137 25.73116601880372 24.322030478701226 98-99 23.268053855569153 25.768356490510712 26.087400971121898 24.87618868279823 100-101 24.013133986039588 25.353182817871268 25.700577959992355 24.933105236096793 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 4.0 1 2.5 2 2.5 3 4.5 4 3.0 5 2.5 6 4.0 7 15.0 8 30.0 9 31.5 10 32.0 11 36.0 12 39.5 13 40.5 14 49.0 15 65.0 16 73.0 17 79.0 18 83.0 19 95.5 20 108.5 21 130.5 22 172.5 23 223.5 24 302.0 25 400.5 26 560.0 27 783.0 28 1065.5 29 1562.5 30 2372.5 31 3580.5 32 5373.0 33 7425.0 34 9434.0 35 11354.0 36 13394.0 37 15249.0 38 16632.5 39 17632.0 40 18164.0 41 19002.0 42 20215.0 43 21660.5 44 23145.0 45 25184.5 46 27146.5 47 28278.5 48 29662.0 49 32381.0 50 35409.5 51 35316.0 52 33893.0 53 34361.5 54 35543.5 55 35109.0 56 30807.0 57 26460.0 58 25140.0 59 23809.0 60 19770.5 61 14867.0 62 11889.5 63 8654.5 64 5342.0 65 3451.0 66 2583.0 67 2194.5 68 1651.0 69 1146.0 70 811.0 71 572.5 72 438.0 73 319.5 74 227.5 75 156.5 76 100.5 77 61.0 78 40.5 79 21.0 80 12.0 81 10.0 82 6.0 83 3.0 84 2.5 85 1.5 86 0.5 87 1.0 88 1.5 89 0.5 90 0.5 91 0.5 92 0.0 93 0.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.4826018534708865 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.001076035347761174 22-23 0.0012105397662313209 24-25 3.362610461753669E-4 26-27 0.002555583950932788 28-29 0.0041023847633394755 30-31 0.001076035347761174 32-33 2.690088369402935E-4 34-35 0.0030936016248133747 36-37 0.0022193229047574215 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.008810039409794612 46-47 0.07989562457126717 48-49 9.415309292910273E-4 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.008070265108208805 58-59 0.03772848938087616 60-61 0.02858218892490618 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 4.035132554104403E-4 78-79 0.009011796037499832 80-81 0.00598544662192153 82-83 9.415309292910273E-4 84-85 0.0034298626709887417 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.06886626225671513 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 743470.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 59.10923114466938 #Duplication Level Percentage of deduplicated Percentage of total 1 78.7664060886599 46.55821703929493 2 13.236573890689652 15.648074113365409 3 3.969072787351571 7.0382652245274375 4 1.5117772860678163 3.574399721657741 5 0.7712008217603858 2.2792543816196815 6 0.404533574479631 1.4347001135817503 7 0.2515315529192269 1.0407485691176157 8 0.17634648969135786 0.8338964336574023 9 0.11888693481777281 0.632458377920248 >10 0.645622811727921 7.080549420229923 >50 0.06833005657569682 2.838559625383584 >100 0.07379581858365607 8.480617038579949 >500 0.0050108271869069194 1.996025339760265 >1k 9.110594885285309E-4 0.564234601304146 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTACATGGGGGGAATTCGTGGAGAAAGAAATGGCTCGTCTGGCAGCATTT 1081 0.14539927636622862 No Hit TCGCACCACTGTGCGGCGACTGCTGGAGACGCTGCAGGAAGAGGGATATG 1054 0.14176765706753466 No Hit ACCAAAGGCCGTGCAATCGCGCAACGATAAACCTAAATGTTGGGTCAGCA 1049 0.14109513497518394 No Hit GTCTTGTTCCGGGCAAAAGGCCAGCCAGGTCAGGCCCGAGGCGGTTTTCA 1007 0.13544594939943777 No Hit CTTTATTGGTGCCCGACCATCATTTAGGTGAGAAAACCCTCTCTACTTTG 936 0.12589613568805735 No Hit TCATTTAGGTGAGAAAACCCTCTCTACTTTGGCGCGACTGCGTGAACGCG 878 0.11809487941678884 No Hit GAACAAGACCGCAAGGAATTAATCGAAATGTTAGCCTCCCGCCCCGGTGA 877 0.11796037499831868 No Hit ACATTACCCTCACTTTTGCCACGGGGCGTCATGCGCTGGAGATGCAGCAT 792 0.10652749942835621 No Hit GAGTACATGGGGGGAATTCGTGGAGAAAGAAATGGCTCGTCTGGCAGCAT 773 0.10397191547742343 No Hit ATATACACCAGATTCAGACAGCCAATCACCCGTTGTTCACTGCGCAGCGG 747 0.10047480059719961 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 1.3450441847014674E-4 6 0.0 0.0 0.0 0.0 1.3450441847014674E-4 7 0.0 0.0 0.0 0.0 1.3450441847014674E-4 8 0.0 0.0 0.0 0.0 1.3450441847014674E-4 9 0.0 0.0 0.0 0.0 1.3450441847014674E-4 10-11 0.0 0.0 0.0 0.0 1.3450441847014674E-4 12-13 0.0 0.0 0.0 0.0 4.0351325541044023E-4 14-15 0.0 0.0 0.0 0.0 4.0351325541044023E-4 16-17 0.0 0.0 0.0 0.0 4.0351325541044023E-4 18-19 0.0 0.0 0.0 0.0 4.0351325541044023E-4 20-21 0.0 0.0 0.0 0.0 4.0351325541044023E-4 22-23 0.0 0.0 0.0 1.3450441847014674E-4 4.0351325541044023E-4 24-25 0.0 0.0 0.0 5.38017673880587E-4 4.0351325541044023E-4 26-27 0.0 0.0 0.0 6.052698831156603E-4 4.0351325541044023E-4 28-29 0.0 0.0 0.0 0.0014122963939365409 4.0351325541044023E-4 30-31 0.0 0.0 0.0 0.0041696369725745495 4.0351325541044023E-4 32-33 0.0 0.0 0.0 0.014593729404010922 4.0351325541044023E-4 34-35 0.0 0.0 0.0 0.024614308580036853 5.38017673880587E-4 36-37 0.0 0.0 0.0 0.04263790065503652 5.38017673880587E-4 38-39 0.0 0.0 0.0 0.07041306306912182 5.38017673880587E-4 40-41 0.0 0.0 0.0 0.10578772512677041 5.38017673880587E-4 42-43 0.0 0.0 0.0 0.13793428114113548 5.38017673880587E-4 44-45 0.0 0.0 0.0 0.17431772633731019 5.38017673880587E-4 46-47 0.0 0.0 0.0 0.2141982864137087 5.38017673880587E-4 48-49 0.0 0.0 0.0 0.25818123125344666 5.38017673880587E-4 50-51 0.0 0.0 0.0 0.30391273353329656 5.38017673880587E-4 52-53 0.0 0.0 0.0 0.35267058522872474 5.38017673880587E-4 54-55 0.0 0.0 0.0 0.40418577750279094 5.38017673880587E-4 56-57 0.0 0.0 0.0 0.4637039826758309 6.052698831156603E-4 58-59 0.0 0.0 0.0 0.5308216874924341 6.725220923507338E-4 60-61 0.0 0.0 0.0 0.602243533700082 6.725220923507338E-4 62-63 0.0 0.0 0.0 0.6756829461847822 6.725220923507338E-4 64-65 0.0 0.0 0.0 0.7517451948296501 6.725220923507338E-4 66-67 0.0 0.0 0.0 0.8409888764845925 7.397743015858071E-4 68-69 0.0 0.0 0.0 0.9424052080110832 8.070265108208805E-4 70-71 0.0 0.0 0.0 1.048529194184029 8.070265108208805E-4 72-73 0.0 0.0 0.0 1.1712644760380377 8.070265108208805E-4 74-75 0.0 0.0 0.0 1.3080554696221771 8.070265108208805E-4 76-77 0.0 0.0 0.0 1.4434341668123798 8.070265108208805E-4 78-79 0.0 0.0 0.0 1.5989212745638692 8.070265108208805E-4 80-81 0.0 0.0 0.0 1.7673880586977282 8.070265108208805E-4 82-83 0.0 0.0 0.0 1.9534749216511762 8.070265108208805E-4 84-85 0.0 0.0 0.0 2.1450764657619006 8.070265108208805E-4 86-87 0.0 0.0 0.0 2.35106998264893 0.0010087831385261006 88-89 0.0 0.0 0.0 2.5769701534695413 0.0012105397662313206 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 1230 0.0 49.639263 1 GGTATCA 605 0.0 48.88288 1 ATCAACG 1570 0.0 38.11179 3 TCAACGC 1630 0.0 36.7089 4 CAACGCA 1830 0.0 32.697002 5 ACCGTGC 235 0.0 32.332596 8 TATCAAC 1930 0.0 31.002855 2 AACGCAG 1945 0.0 30.76376 6 CGCAGAG 1980 0.0 30.699638 8 CCGTGCG 190 1.2732926E-11 29.992735 9 ACGCAGA 2040 0.0 29.331133 7 ACCGTAT 135 4.2306783E-7 28.141335 8 CGTTACG 35 0.008378862 27.151808 52-53 GGACCGT 125 7.400213E-6 26.59356 6 AACCGTG 215 5.820766E-11 26.50521 7 GTACATG 2955 0.0 26.473225 1 GTCTAGG 205 9.094947E-10 25.595243 1 GACCGCA 570 0.0 24.993948 7 GACCGTA 95 0.0012278793 24.993946 7 TACATGG 2910 0.0 24.96818 2 >>END_MODULE