##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3224494_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 240347 Sequences flagged as poor quality 0 Sequence length 101 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.09041094750506 34.0 31.0 34.0 30.0 34.0 2 32.257868831314724 34.0 31.0 34.0 31.0 34.0 3 32.40411155537618 34.0 31.0 34.0 31.0 34.0 4 35.68537572759385 37.0 35.0 37.0 35.0 37.0 5 35.70180197797351 37.0 37.0 37.0 35.0 37.0 6 35.815292056901065 37.0 37.0 37.0 35.0 37.0 7 35.77998477201712 37.0 37.0 37.0 35.0 37.0 8 35.80467823605038 37.0 37.0 37.0 35.0 37.0 9 37.5164574552626 39.0 38.0 39.0 35.0 39.0 10-11 37.5963481965658 39.0 38.5 39.0 35.0 39.0 12-13 37.59845556632702 39.0 39.0 39.0 35.0 39.0 14-15 39.08161533116702 41.0 40.0 41.0 36.0 41.0 16-17 38.92684743308633 41.0 39.5 41.0 35.5 41.0 18-19 39.022242840559684 41.0 39.5 41.0 36.0 41.0 20-21 39.07906277174253 41.0 40.0 41.0 36.0 41.0 22-23 39.038165652161254 41.0 40.0 41.0 36.0 41.0 24-25 38.98190324822028 41.0 39.5 41.0 35.5 41.0 26-27 38.80164928207966 41.0 39.0 41.0 35.0 41.0 28-29 38.712193203992555 41.0 39.0 41.0 35.0 41.0 30-31 38.60692873220802 41.0 39.0 41.0 35.0 41.0 32-33 38.39047294120584 40.0 38.5 41.0 34.0 41.0 34-35 38.382461607592354 40.0 38.0 41.0 34.0 41.0 36-37 38.38359954565691 40.0 38.0 41.0 34.0 41.0 38-39 38.27028421407382 40.0 38.0 41.0 34.0 41.0 40-41 38.15897015564995 40.0 38.0 41.0 33.5 41.0 42-43 37.997420396343614 40.0 38.0 41.0 33.0 41.0 44-45 37.79159298847084 40.0 38.0 41.0 33.0 41.0 46-47 37.57329402904966 40.0 37.0 41.0 32.0 41.0 48-49 37.32177851190154 40.0 37.0 41.0 31.5 41.0 50-51 36.05025858446329 38.5 35.5 40.0 29.5 40.5 52-53 36.40673692619421 39.0 35.5 40.0 30.5 40.5 54-55 36.887974470245105 40.0 36.0 41.0 31.0 41.0 56-57 36.75018826946041 39.0 35.0 41.0 31.0 41.0 58-59 36.609537460421805 39.0 35.0 41.0 31.0 41.0 60-61 36.3744377920257 39.0 35.0 41.0 30.5 41.0 62-63 36.078492762547484 38.5 35.0 41.0 30.0 41.0 64-65 35.83313916961726 37.5 35.0 41.0 29.0 41.0 66-67 35.56363091696589 37.0 35.0 40.0 29.0 41.0 68-69 35.251550882682125 36.5 35.0 40.0 29.0 41.0 70-71 34.92701593945421 36.0 35.0 39.0 28.5 41.0 72-73 34.60599674637088 35.5 34.0 39.0 28.0 41.0 74-75 34.31480318040167 35.0 34.0 38.5 28.0 40.5 76-77 33.962697682933424 35.0 34.0 37.0 27.0 39.5 78-79 33.697949215093175 35.0 34.0 37.0 27.0 39.0 80-81 33.39170241359368 35.0 34.0 36.5 27.0 39.0 82-83 33.12640473981368 35.0 34.0 36.0 26.0 38.0 84-85 32.89789138204346 35.0 34.0 36.0 26.0 37.0 86-87 32.671308566364466 35.0 33.0 35.0 26.0 37.0 88-89 32.52005849875388 35.0 33.0 35.0 25.5 36.0 90-91 32.32942162789634 35.0 33.0 35.0 25.0 36.0 92-93 32.190545336534264 35.0 33.0 35.0 25.0 36.0 94-95 32.05521391987418 35.0 33.0 35.0 25.0 36.0 96-97 31.92124511643582 35.0 33.0 35.0 24.0 35.0 98-99 31.859567625141985 35.0 33.0 35.0 24.0 35.0 100-101 30.685461020940558 34.0 31.0 35.0 21.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 6 1.0 7 37.0 8 169.0 9 118.0 10 145.0 11 278.0 12 499.0 13 567.0 14 588.0 15 576.0 16 586.0 17 647.0 18 802.0 19 964.0 20 1091.0 21 1563.0 22 1930.0 23 1673.0 24 1525.0 25 1428.0 26 1514.0 27 1607.0 28 1770.0 29 2049.0 30 2571.0 31 3092.0 32 3945.0 33 5511.0 34 8613.0 35 15127.0 36 31430.0 37 56857.0 38 69053.0 39 22015.0 40 6.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.52763689253222 19.378123033452663 13.958683231159696 23.13555684285542 2 15.545856615643217 19.366582482826914 40.14154534901622 24.946015552513657 3 20.281925715735998 25.167362188835305 28.34901205340612 26.201700042022573 4 12.95085855034596 16.63844358365197 38.81721011703911 31.593487748962957 5 13.802127756951407 38.23347077350664 33.84980881808385 14.1145926514581 6 29.989972830948584 37.12632152679251 18.72417795936708 14.159527682891818 7 27.531860185481825 31.6484083429375 21.51098203846938 19.308749433111295 8 26.035273999675468 35.050156648512356 19.874597977091454 19.039971374720714 9 26.07022346856836 16.68878746146197 20.38968657815575 36.85130249181392 10-11 25.89880464495084 25.83015390248266 26.99097554785373 21.28006590471277 12-13 26.371246572663694 23.144245611553295 27.589901267750378 22.894606548032638 14-15 23.202423959911435 25.054938651838782 25.21642499209216 26.52621239615762 16-17 22.801816917651664 28.118091320512768 26.061568694392285 23.018523067443283 18-19 22.850008843204776 27.08767257254029 27.622010216502463 22.440308367752472 20-21 23.9223675968376 25.564335377642184 27.823966070161344 22.689330955358873 22-23 23.538472746953094 26.387943506000145 27.146886481198155 22.926697265848606 24-25 22.95778135188726 26.138068357964865 27.605140891811985 23.29900939833589 26-27 23.02233853553404 26.743832874968277 27.580331770315418 22.653496819182266 28-29 22.865690023174825 26.824341472953687 27.55744818949269 22.752520314378792 30-31 23.040229335086355 26.130552908919185 27.72553849226327 23.103679263731188 32-33 22.670139423416977 26.340873819935346 27.886555688234093 23.102431068413583 34-35 23.332723104511395 26.27867208660811 27.529363794846617 22.859241014033877 36-37 22.957676141329227 26.214782138249614 27.877148445628197 22.950393274792958 38-39 22.928733106983557 26.47481026562812 27.466754876506222 23.1297017508821 40-41 23.56439969209645 25.923398589468867 27.752928204381384 22.759273514053298 42-43 23.277759516686707 26.314070424937903 27.59183826313446 22.81633179524093 44-45 23.3373279904794 26.24843438567582 27.26998472875862 23.144252895086158 46-47 23.371209126804164 26.18692973076427 26.93085414005584 23.51100700237573 48-49 23.143621513894495 26.34004168972361 27.11433885174352 23.401997944638378 50-51 23.185644089587136 26.645017412324677 26.826421798483025 23.342916699605155 52-53 23.474809338165237 26.65042625870096 26.2485073664327 23.626257036701105 54-55 23.23619599995007 26.440937477896544 26.64376921700708 23.67909730514631 56-57 23.303230960301065 26.908650635644786 26.335103694041727 23.45301471001242 58-59 23.686701717081977 26.642338044403203 26.61008944305625 23.060870795458566 60-61 23.518176370718066 26.70153800059922 26.594593694863345 23.18569193381937 62-63 23.357333111370068 26.569835192275676 26.689487264857664 23.383344431496585 64-65 23.97405959799037 26.1568495231911 26.200347148512133 23.6687437303064 66-67 23.245357607282184 26.36421326397919 26.314902470741224 24.075526657997397 68-69 23.456502473507054 26.32319105293596 26.90817859178604 23.312127881770937 70-71 23.503725863023046 26.083745584509067 26.840151946976665 23.572376605491225 72-73 23.316704597935484 26.21959084157489 26.841816207400132 23.62188835308949 74-75 23.45234182244838 26.272015044914227 26.810611324460055 23.465031808177343 76-77 23.43549118566073 25.937498699796546 26.39142573029828 24.235584384244447 78-79 23.439379122365327 25.62327042716548 26.800940471484157 24.13640997898504 80-81 23.422341464023827 26.39251690627192 26.31113368287185 23.8740079468324 82-83 23.345529318231957 26.49192692398946 26.64219144782574 23.520352309952838 84-85 23.279675723815902 26.151842156736265 26.89740271090229 23.67107940854554 86-87 22.87793922666883 26.88675612614244 26.70130151256866 23.534003134620068 88-89 23.44911111712278 26.140211051156285 26.411776579606155 23.998901252114777 90-91 22.9176981614083 26.263277677691004 26.770044976637948 24.048979184262752 92-93 22.96117383462213 26.35656495680087 27.043090948050786 23.639170260526214 94-95 23.16380067152908 26.19608316309336 26.84056801208253 23.799548153295028 96-97 23.2842515196778 26.574494376880093 26.70617898288724 23.435075120554867 98-99 22.52731478784752 26.867515997769882 26.79095969976617 23.814209514616426 100-101 23.078459937565036 26.273257023933404 26.578772112382936 24.069510926118625 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 1.0 3 2.5 4 1.5 5 1.0 6 4.5 7 8.5 8 15.5 9 24.0 10 27.0 11 21.5 12 27.5 13 44.0 14 48.5 15 49.5 16 65.0 17 84.0 18 81.5 19 92.0 20 113.0 21 111.5 22 145.0 23 207.5 24 270.0 25 352.5 26 497.5 27 659.5 28 836.5 29 1099.5 30 1498.5 31 2081.0 32 2964.5 33 4169.0 34 5414.5 35 6464.0 36 7322.5 37 7918.0 38 7817.0 39 7442.0 40 7150.0 41 6897.5 42 6649.0 43 6468.5 44 6707.5 45 7312.0 46 7893.0 47 8175.0 48 8489.5 49 9010.0 50 9757.0 51 9861.5 52 9511.5 53 9760.0 54 9928.5 55 9683.0 56 8545.0 57 7303.0 58 6651.5 59 5941.5 60 4930.5 61 3868.0 62 3217.5 63 2421.0 64 1602.5 65 1132.0 66 899.0 67 734.5 68 548.5 69 378.0 70 256.5 71 186.5 72 129.5 73 97.5 74 70.0 75 48.0 76 40.0 77 29.0 78 21.0 79 15.5 80 7.0 81 6.0 82 6.5 83 3.0 84 3.0 85 3.5 86 2.5 87 2.0 88 1.0 89 0.5 90 0.5 91 1.0 92 1.0 93 1.0 94 1.5 95 1.5 96 0.5 97 0.5 98 1.5 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.16476178192363541 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.03286914336355353 16-17 0.06657041693884258 18-19 0.020595222740454427 20-21 0.03598963165756177 22-23 0.06012140779789221 24-25 0.016018506575909 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.023715711034462673 38-39 0.004576716164545428 40-41 0.004992781270413194 42-43 0.002496390635206597 44-45 0.010817692752561921 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 2.080325529338831E-4 58-59 0.011025725305495804 60-61 0.014562278705371816 62-63 0.027876362093140337 64-65 0.043270771010247684 66-67 0.014354246152437935 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.01747473444644618 80-81 0.05221617078640466 82-83 0.043270771010247684 84-85 0.02413177614033044 86-87 0.05263223589227242 88-89 0.030580785281280817 90-91 0.0 92-93 0.0027044231881404803 94-95 0.0 96-97 0.0 98-99 4.160651058677662E-4 100-101 0.04035831526917332 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 240347.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 70.18939419926475 #Duplication Level Percentage of deduplicated Percentage of total 1 85.15603172654325 59.77050279299441 2 9.772444879382409 13.718439718591165 3 2.3064401616586396 4.856629131110226 4 0.9079204588993663 2.5490554796505993 5 0.45411647624752144 1.593708018185917 6 0.2906533412749741 1.2240469167649553 7 0.18671524199125764 0.9173800806194846 8 0.139896518226899 0.7855401491945952 9 0.09575513035445347 0.6048895131945645 >10 0.6115782904110827 8.338037032844388 >50 0.05705292728013569 2.7943974156544473 >100 0.021394847730050882 2.8473737511952915 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source ACCAAAGGCCGTGCAATCGCGCAACGATAAACCTAAATGTTGGGTCAGCA 419 0.17433127935859405 No Hit TCGCACCACTGTGCGGCGACTGCTGGAGACGCTGCAGGAAGAGGGATATG 403 0.1676742376647098 No Hit GCCCATAATAAATCCGCTACCGACGCTGACTAACATTTCGCGATCGTTCA 384 0.15976900065322222 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 349 0.1452067219478504 No Hit ATACAAAACCGTGCGCGGCTTAACCCGCGGTCTAATGTTATTAAATATGT 339 0.14104607088917273 No Hit GTCTAATGTTATTAAATATGTTAAATAAACTTGATGGCGGTGCCAGCGTC 313 0.1302283781366108 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 292 0.12149101091338774 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10-11 0.0 0.0 0.0 0.0 0.0 12-13 0.0 0.0 0.0 0.0 0.0 14-15 0.0 0.0 0.0 0.0 0.0 16-17 0.0 0.0 0.0 0.0 0.0 18-19 0.0 0.0 0.0 0.0 0.0 20-21 0.0 0.0 0.0 6.240976588016493E-4 0.0 22-23 0.0 0.0 0.0 8.321302117355324E-4 0.0 24-25 0.0 0.0 0.0 0.0012481953176032986 0.0 26-27 0.0 0.0 0.0 0.0016642604234710647 0.0 28-29 0.0 0.0 0.0 0.002080325529338831 0.0 30-31 0.0 0.0 0.0 0.0031204882940082464 0.0 32-33 0.0 0.0 0.0 0.006865074246818143 0.0 34-35 0.0 0.0 0.0 0.011857855517231336 0.0 36-37 0.0 0.0 0.0 0.02288358082272714 0.0 38-39 0.0 0.0 0.0 0.03765389208103284 0.0 40-41 0.0 0.0 0.0 0.054088463762809603 0.0 42-43 0.0 0.0 0.0 0.07572384926793345 0.0 44-45 0.0 0.0 0.0 0.10110382072586718 0.0 46-47 0.0 0.0 0.0 0.12440346665446209 0.0 48-49 0.0 0.0 0.0 0.14624688471251981 0.0 50-51 0.0 0.0 0.0 0.16975456319404858 0.0 52-53 0.0 0.0 0.0 0.20512009719280871 0.0 54-55 0.0 0.0 0.0 0.2375731754504945 0.0 56-57 0.0 0.0 0.0 0.2754351000844612 0.0 58-59 0.0 0.0 0.0 0.32016209896524606 0.0 60-61 0.0 0.0 0.0 0.3692577814576425 0.0 62-63 0.0 0.0 0.0 0.41377674778549345 0.0 64-65 0.0 0.0 0.0 0.4659929185718981 0.0 66-67 0.0 0.0 0.0 0.5306910425343359 0.0 68-69 0.0 0.0 0.0 0.6111996405197486 0.0 70-71 0.0 0.0 0.0 0.690460043187558 0.0 72-73 0.0 0.0 0.0 0.7919799290192929 0.0 74-75 0.0 0.0 0.0 0.8993247263331766 0.0 76-77 0.0 0.0 0.0 1.0062534585411926 0.0 78-79 0.0 0.0 0.0 1.1250400462664398 0.0 80-81 0.0 0.0 0.0 1.2617174335440011 0.0 82-83 0.0 0.0 0.0 1.4050518625154464 0.0 84-85 0.0 0.0 0.0 1.5550433331807763 0.0 86-87 0.0 0.0 0.0 1.7081552921401142 0.0 88-89 0.0 0.0 0.0 1.9026657291332947 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 585 0.0 51.26109 1 GGTATCA 290 0.0 50.882317 1 GGATAGG 55 4.890696E-5 43.27235 1 ACCGTGC 85 3.630321E-7 39.109932 8 ATCAACG 760 0.0 38.742363 3 TCAACGC 795 0.0 37.036724 4 CCGTGCG 90 5.6725E-7 36.94485 9 TATCAAC 820 0.0 35.907555 2 TACACTA 80 1.0755199E-5 35.617977 5 TGGTATC 160 1.8189894E-12 35.617977 2 AAACCGT 95 8.67527E-7 34.9931 6 TCTAATG 220 0.0 34.538647 2 GTCTAAT 195 0.0 34.17406 1 GTTATTA 195 0.0 34.09584 8 AGTTGCG 70 2.0508932E-4 33.921883 2 CAACGCA 885 0.0 33.270275 5 AACCGTG 115 1.0323856E-7 33.036964 7 AACGCAG 915 0.0 32.69847 6 ACTACTC 75 3.074812E-4 31.660427 8 TACACCG 75 3.074812E-4 31.660427 5 >>END_MODULE