##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3224494_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 240347 Sequences flagged as poor quality 0 Sequence length 101 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.13067772845095 34.0 33.0 34.0 31.0 34.0 2 33.254365563123315 34.0 33.0 34.0 31.0 34.0 3 33.37741265753265 34.0 34.0 34.0 31.0 34.0 4 36.596862036971544 37.0 37.0 37.0 35.0 37.0 5 36.630854556120944 37.0 37.0 37.0 35.0 37.0 6 36.6692615260436 37.0 37.0 37.0 35.0 37.0 7 36.64963573499981 37.0 37.0 37.0 35.0 37.0 8 36.636296687705695 37.0 37.0 37.0 35.0 37.0 9 38.45941076859707 39.0 39.0 39.0 37.0 39.0 10-11 38.493278468214704 39.0 39.0 39.0 37.0 39.0 12-13 38.49059276795633 39.0 39.0 39.0 37.0 39.0 14-15 40.069861491926254 41.0 40.0 41.0 38.0 41.0 16-17 40.08326710963732 41.0 40.0 41.0 38.0 41.0 18-19 40.07995107074355 41.0 40.0 41.0 38.0 41.0 20-21 40.0901155412799 41.0 40.0 41.0 38.0 41.0 22-23 40.01320382613471 41.0 40.0 41.0 38.0 41.0 24-25 39.9746720366803 41.0 40.0 41.0 38.0 41.0 26-27 39.907213320740425 41.0 40.0 41.0 38.0 41.0 28-29 39.87046228993913 41.0 40.0 41.0 38.0 41.0 30-31 39.78693721993618 41.0 40.0 41.0 37.5 41.0 32-33 39.711635676750696 41.0 40.0 41.0 37.0 41.0 34-35 39.61883651553795 41.0 40.0 41.0 37.0 41.0 36-37 39.50765143729691 41.0 40.0 41.0 36.0 41.0 38-39 39.40064365271878 41.0 39.5 41.0 36.0 41.0 40-41 39.25728217951546 41.0 39.0 41.0 35.0 41.0 42-43 39.137779959808114 41.0 39.0 41.0 35.0 41.0 44-45 38.87113839573617 41.0 39.0 41.0 35.0 41.0 46-47 38.600673193341294 40.5 38.0 41.0 35.0 41.0 48-49 38.46039268224692 40.0 38.0 41.0 35.0 41.0 50-51 38.30544795649624 40.0 38.0 41.0 35.0 41.0 52-53 38.082601405467926 40.0 37.0 41.0 34.5 41.0 54-55 37.898080691666635 40.0 37.0 41.0 34.0 41.0 56-57 37.68595821874207 40.0 36.0 41.0 34.0 41.0 58-59 37.42862611141391 39.5 35.5 41.0 33.5 41.0 60-61 37.18843588644751 39.0 35.0 41.0 33.0 41.0 62-63 36.97463875147183 39.0 35.0 41.0 33.0 41.0 64-65 36.69189338747728 38.0 35.0 41.0 33.0 41.0 66-67 36.38650784074692 37.0 35.0 40.0 32.5 41.0 68-69 36.1223709886123 37.0 35.0 40.0 32.0 41.0 70-71 35.80942553890833 36.5 35.0 39.5 32.0 41.0 72-73 35.49229863489039 36.0 35.0 39.0 31.5 41.0 74-75 35.15386919745201 35.5 35.0 39.0 31.0 40.5 76-77 33.3043745085231 34.5 32.0 36.5 28.5 39.0 78-79 34.60517917843784 35.0 34.5 37.0 31.0 39.0 80-81 34.520050177451765 35.0 35.0 37.0 32.0 39.0 82-83 34.302304584621396 35.0 35.0 36.0 31.5 38.0 84-85 34.0802880834793 35.0 35.0 36.0 31.0 37.0 86-87 33.86996509213762 35.0 34.5 36.0 31.0 37.0 88-89 33.694229593046714 35.0 34.0 35.0 31.0 36.5 90-91 33.550551910362934 35.0 34.0 35.0 31.0 36.0 92-93 33.44679983523822 35.0 34.0 35.0 31.0 36.0 94-95 33.32948195733668 35.0 34.0 35.0 30.5 36.0 96-97 33.27055881704369 35.0 34.0 35.0 30.0 36.0 98-99 33.22178558500835 35.0 34.0 35.0 30.0 35.0 100-101 32.40497489047086 34.5 33.0 35.0 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 1.0 15 14.0 16 39.0 17 88.0 18 188.0 19 301.0 20 475.0 21 894.0 22 1273.0 23 1196.0 24 935.0 25 805.0 26 955.0 27 1145.0 28 1389.0 29 1634.0 30 1830.0 31 2140.0 32 2753.0 33 3717.0 34 5906.0 35 11488.0 36 28940.0 37 62394.0 38 82027.0 39 27810.0 40 10.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.93404792561997 19.36046219962877 13.827109914549924 22.878379960201332 2 15.548353006278424 19.528431809009476 40.44402468098208 24.479190503730024 3 20.219515949855836 25.327963319700263 28.825822664730577 25.62669806571332 4 12.872638310442818 16.92927309265354 39.08473998011209 31.11334861679155 5 13.627796477592813 37.643074388280276 34.528827070860046 14.200302063266859 6 29.91716143742173 37.04685309157177 18.885195155337907 14.150790315668596 7 27.492334000424385 31.614291004256344 21.735241130532106 19.15813386478716 8 26.04026678094588 34.70523867574798 19.894569102173108 19.359925441133026 9 26.196707260752163 16.812774863010564 20.542382472009223 36.448135404228054 10-11 25.94686016467857 25.738619579191752 27.234581667339302 21.079938588790373 12-13 26.48316808614212 23.474601305612303 27.551415245457612 22.49081536278797 14-15 23.476265566035774 25.051488056851134 25.550766183892453 25.921480193220635 16-17 22.708001348050942 28.01283144786496 26.500434788035633 22.778732416048463 18-19 22.51120255297549 27.06441103903939 28.219823838034173 22.204562569950944 20-21 23.784143626869707 25.76629428529822 28.19571865443425 22.253843433397826 22-23 23.657133109210132 26.2032753053956 27.473745964118095 22.66584562127617 24-25 23.1332198862478 26.14573928528336 27.73094733863955 22.990093489829288 26-27 23.049094317091996 26.807673184421464 27.60840214110221 22.53483035738433 28-29 22.91772420507785 26.718829315380837 27.939402008837554 22.42404447070376 30-31 22.88774147378582 26.086450007697202 28.205261559328804 22.820546959188174 32-33 22.84327002889578 26.268117072643037 28.232156490733168 22.656456407728008 34-35 23.343915520031956 26.3173990288798 27.70272238194898 22.635963069139265 36-37 22.853380377210904 26.01719209629571 28.10857815705055 23.02084936944284 38-39 22.853832167657593 26.20253217223431 27.695373772087855 23.248261888020238 40-41 23.079963552696725 26.27575963086704 28.00034949468893 22.643927321747306 42-43 23.11012827287214 26.360220847358196 27.872617507187524 22.65703337258214 44-45 23.417610905595527 26.108847896736393 27.491812897131705 22.981728300536375 46-47 23.162834858144656 26.13965245128863 27.338957853576467 23.35855483699024 48-49 22.84274097081077 25.976562906316115 27.559076412913907 23.621619709959205 50-51 23.267608915443088 26.318614336771418 27.017811747182197 23.395965000603294 52-53 23.43757151119007 26.707219145651912 26.67622229526476 23.178987047893255 54-55 23.555525968703584 26.1858895679996 26.95082526513749 23.307759198159328 56-57 23.57691947614243 26.553628826729636 26.61666649329575 23.25278520383219 58-59 23.840522103230263 26.450205819553062 26.820431284572066 22.888840792644604 60-61 23.575056756346203 26.597345197195786 26.793989549757264 23.033608496700744 62-63 23.514751588328544 26.27471946810237 27.008450282300174 23.202078661268917 64-65 23.626881134359902 26.201283976916706 26.70763521075778 23.46419967796561 66-67 23.263656296937345 26.318406304218485 26.671021481441414 23.746915917402756 68-69 23.718415457650813 26.112662109366873 26.901105484986292 23.267816947996025 70-71 23.750036405696765 26.05337283178072 26.95311362321976 23.243477139302758 72-73 23.271353501395897 26.254124245361915 26.85492225823497 23.619599995007217 74-75 23.53222632277499 26.127016355519313 26.81040329190712 23.530354029798584 76-77 23.493630016725888 25.803633095620484 26.821540612283957 23.881196275369675 78-79 23.36703699080431 25.665335164149294 26.88220363666625 24.085424208380143 80-81 23.00705265566813 26.48136975471737 26.846485114527642 23.66509247508686 82-83 23.282926311716356 26.411989506685224 27.001978418388685 23.30310576320974 84-85 23.345288419931432 26.03643111540126 27.137353127184372 23.48092733748294 86-87 22.836981530869952 26.702018331828565 26.944168223443604 23.51683191385788 88-89 23.49061981218821 25.871552380516505 26.594049436855876 24.043778370439405 90-91 23.195837684680896 26.370830507557823 26.540377038198937 23.89295476956234 92-93 23.22579437230338 26.358140521828854 27.01801977973513 23.39804532613263 94-95 23.24846992057317 26.231864762197986 26.736967800721455 23.782697516507383 96-97 23.15194281601185 26.5769907675153 26.87530944842249 23.39575696805036 98-99 22.440263452425036 26.871564862469675 26.90089745243336 23.78727423267193 100-101 23.048980280071692 26.433821769152143 26.796037279053742 23.72116067172242 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1.0 1 0.5 2 1.0 3 3.0 4 3.0 5 1.0 6 3.5 7 11.5 8 19.0 9 31.0 10 40.0 11 36.5 12 37.5 13 47.5 14 53.0 15 57.5 16 68.0 17 78.5 18 91.5 19 108.0 20 115.5 21 133.5 22 177.5 23 233.5 24 308.5 25 408.0 26 555.5 27 723.0 28 901.0 29 1170.5 30 1546.5 31 2089.0 32 3032.5 33 4337.5 34 5616.5 35 6694.5 36 7490.0 37 7829.5 38 7727.0 39 7415.5 40 7040.0 41 6690.0 42 6492.5 43 6597.5 44 6905.0 45 7317.5 46 7763.0 47 8151.5 48 8548.5 49 9303.5 50 10121.0 51 9855.0 52 9250.5 53 9561.5 54 9930.5 55 9583.5 56 8318.5 57 7156.5 58 6701.0 59 6232.5 60 5165.5 61 3849.5 62 3060.0 63 2237.0 64 1444.5 65 982.5 66 745.0 67 592.5 68 437.5 69 320.5 70 222.5 71 154.5 72 118.5 73 99.5 74 73.0 75 49.5 76 34.5 77 20.0 78 7.5 79 5.0 80 3.5 81 2.5 82 3.0 83 1.5 84 0.0 85 0.0 86 0.0 87 0.0 88 0.5 89 0.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.4755624160068568 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 8.321302117355324E-4 22-23 0.0012481953176032986 24-25 0.0 26-27 0.0014562278705371817 28-29 0.0037445859528098956 30-31 0.0 32-33 2.080325529338831E-4 34-35 0.002496390635206597 36-37 0.0016642604234710647 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.012481953176032986 46-47 0.08654154202049537 48-49 6.240976588016493E-4 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.00603294403508261 58-59 0.036613729316363426 60-61 0.027252264434338685 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 4.160651058677662E-4 78-79 0.007073106799752025 80-81 0.004992781270413194 82-83 0.0014562278705371817 84-85 0.0012481953176032986 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.06594631928004094 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 240347.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 68.43620888529644 #Duplication Level Percentage of deduplicated Percentage of total 1 83.90761460830288 57.42319040400766 2 10.563608257894394 14.458666026394063 3 2.581069780386806 5.29915891914233 4 0.9348864207108966 2.5592032948719217 5 0.5051041154044823 1.7283705375322016 6 0.32157039042845514 1.3204235046412853 7 0.21351081088175594 1.0228309316941009 8 0.14188425986774456 0.7768016676675719 9 0.09735509964981119 0.5996352542114995 >10 0.6506951175557557 8.814046529845621 >50 0.053512501652190604 2.4877941143138127 >100 0.029188637264831237 3.509878815677935 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 407 0.16933849808818083 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 359 0.14936737300652805 No Hit TCGCACCACTGTGCGGCGACTGCTGGAGACGCTGCAGGAAGAGGGATATG 359 0.14936737300652805 No Hit ATACAAAACCGTGCGCGGCTTAACCCGCGGTCTAATGTTATTAAATATGT 352 0.1464549172654537 No Hit GTCTAATGTTATTAAATATGTTAAATAAACTTGATGGCGGTGCCAGCGTC 307 0.12773198750140421 No Hit GAGTACATGGGGGGAATTCGTGGAGAAAGAAATGGCTCGTCTGGCAGCAT 274 0.11400183900776793 No Hit ACCAAAGGCCGTGCAATCGCGCAACGATAAACCTAAATGTTGGGTCAGCA 258 0.10734479731388369 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10-11 0.0 0.0 0.0 0.0 0.0 12-13 0.0 0.0 0.0 0.0 0.0 14-15 0.0 0.0 0.0 0.0 0.0 16-17 0.0 0.0 0.0 0.0 0.0 18-19 0.0 0.0 0.0 0.0 0.0 20-21 0.0 0.0 0.0 6.240976588016493E-4 0.0 22-23 0.0 0.0 0.0 8.321302117355324E-4 0.0 24-25 0.0 0.0 0.0 0.0012481953176032986 0.0 26-27 0.0 0.0 0.0 0.0016642604234710647 0.0 28-29 0.0 0.0 0.0 0.002080325529338831 0.0 30-31 0.0 0.0 0.0 0.0031204882940082464 0.0 32-33 0.0 0.0 0.0 0.006865074246818143 0.0 34-35 0.0 0.0 0.0 0.01206588807016522 4.160651058677662E-4 36-37 0.0 0.0 0.0 0.023091613375661024 4.160651058677662E-4 38-39 0.0 0.0 0.0 0.038486022292768374 4.160651058677662E-4 40-41 0.0 0.0 0.0 0.055544691633346785 4.160651058677662E-4 42-43 0.0 0.0 0.0 0.07697204458553675 4.160651058677662E-4 44-45 0.0 0.0 0.0 0.10235201604347048 4.160651058677662E-4 46-47 0.0 0.0 0.0 0.1264837921838009 4.160651058677662E-4 48-49 0.0 0.0 0.0 0.14832721024185863 4.160651058677662E-4 50-51 0.0 0.0 0.0 0.17162685617045353 4.160651058677662E-4 52-53 0.0 0.0 0.0 0.20657632506334592 4.160651058677662E-4 54-55 0.0 0.0 0.0 0.23965350097983332 4.160651058677662E-4 56-57 0.0 0.0 0.0 0.27709936050793227 4.160651058677662E-4 58-59 0.0 0.0 0.0 0.3224504570475188 4.160651058677662E-4 60-61 0.0 0.0 0.0 0.371962204645783 4.160651058677662E-4 62-63 0.0 0.0 0.0 0.4171052686324356 4.160651058677662E-4 64-65 0.0 0.0 0.0 0.4689053743129725 4.160651058677662E-4 66-67 0.0 0.0 0.0 0.5342275959342118 4.160651058677662E-4 68-69 0.0 0.0 0.0 0.6153602915784262 4.160651058677662E-4 70-71 0.0 0.0 0.0 0.6956608570109051 4.160651058677662E-4 72-73 0.0 0.0 0.0 0.7994691009249127 4.160651058677662E-4 74-75 0.0 0.0 0.0 0.9072299633446641 4.160651058677662E-4 76-77 0.0 0.0 0.0 1.0149908257644156 4.160651058677662E-4 78-79 0.0 0.0 0.0 1.1346095437013983 4.160651058677662E-4 80-81 0.0 0.0 0.0 1.2737833216141663 4.160651058677662E-4 82-83 0.0 0.0 0.0 1.4169097180326777 4.160651058677662E-4 84-85 0.0 0.0 0.0 1.5669011886980075 4.160651058677662E-4 86-87 0.0 0.0 0.0 1.7210533104220147 4.160651058677662E-4 88-89 0.0 0.0 0.0 1.9188922682621377 4.160651058677662E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAGCGTT 40 7.5334556E-6 59.36694 6 GTCGACA 25 0.005019155 56.99226 8 GGTATCA 360 0.0 53.024372 1 CCGTGCG 50 2.822536E-5 47.49355 9 GTATCAA 710 0.0 44.361237 1 AAACCGT 55 4.9555194E-5 43.175953 6 ATCAACG 855 0.0 37.217167 3 TCAACGC 865 0.0 36.78691 4 ATAGCGT 65 1.3261191E-4 36.5335 5 ACCGTGC 65 1.3261191E-4 36.5335 8 TGGTATC 235 0.0 36.37804 2 CAACGCA 915 0.0 34.776695 5 TATCAAC 935 0.0 34.03281 2 AACGCAG 970 0.0 33.294445 6 CCGATAT 30 0.0039513106 31.662369 70-71 CGTTTAA 90 2.4073193E-5 31.662369 9 CGCAGAG 1020 0.0 31.662367 8 ACGCAGA 1035 0.0 31.203491 7 GTGCGCG 55 2.7319784E-6 30.223167 10-11 TGCGCGG 40 4.493365E-4 29.68347 12-13 >>END_MODULE