##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3224489_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 27267 Sequences flagged as poor quality 0 Sequence length 101 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.07631936039902 34.0 33.0 34.0 31.0 34.0 2 33.19485091869293 34.0 33.0 34.0 31.0 34.0 3 33.313565848828254 34.0 34.0 34.0 31.0 34.0 4 36.55150915025489 37.0 37.0 37.0 35.0 37.0 5 36.594821579198296 37.0 37.0 37.0 35.0 37.0 6 36.64649576411046 37.0 37.0 37.0 35.0 37.0 7 36.62834195180988 37.0 37.0 37.0 35.0 37.0 8 36.6186599185829 37.0 37.0 37.0 35.0 37.0 9 38.43558147210914 39.0 39.0 39.0 37.0 39.0 10-11 38.4741995819122 39.0 39.0 39.0 37.0 39.0 12-13 38.46956027432428 39.0 39.0 39.0 37.0 39.0 14-15 40.04587963472329 41.0 40.0 41.0 38.0 41.0 16-17 40.04206550042176 41.0 40.0 41.0 38.0 41.0 18-19 40.06080610261488 41.0 40.0 41.0 38.0 41.0 20-21 40.05447977408589 41.0 40.0 41.0 38.0 41.0 22-23 39.94949939487292 41.0 40.0 41.0 38.0 41.0 24-25 39.91359518832289 41.0 40.0 41.0 38.0 41.0 26-27 39.821065757142335 41.0 40.0 41.0 37.5 41.0 28-29 39.7549968826787 41.0 40.0 41.0 37.0 41.0 30-31 39.637638904169876 41.0 40.0 41.0 37.0 41.0 32-33 39.50959034730627 41.0 40.0 41.0 35.5 41.0 34-35 39.363167931932374 41.0 39.5 41.0 35.0 41.0 36-37 39.196776323027834 41.0 39.0 41.0 35.0 41.0 38-39 39.04193714013276 41.0 39.0 41.0 35.0 41.0 40-41 38.83756922287014 41.0 39.0 41.0 35.0 41.0 42-43 38.680181171379324 41.0 38.0 41.0 35.0 41.0 44-45 38.30219679466021 40.0 38.0 41.0 35.0 41.0 46-47 37.920398283639564 40.0 37.0 41.0 34.0 41.0 48-49 37.686305790882756 40.0 37.0 41.0 34.0 41.0 50-51 37.45210327502109 40.0 36.5 41.0 33.0 41.0 52-53 37.1636226940991 39.5 35.5 41.0 33.0 41.0 54-55 36.91023948362489 39.0 35.0 41.0 33.0 41.0 56-57 36.67253456559211 39.0 35.0 41.0 33.0 41.0 58-59 36.37816774856053 38.0 35.0 41.0 32.0 41.0 60-61 36.084736127920195 37.5 35.0 41.0 31.0 41.0 62-63 35.87732423809 37.0 35.0 40.5 31.0 41.0 64-65 35.65183188469578 36.5 35.0 40.0 31.0 41.0 66-67 35.351102064766934 36.0 35.0 40.0 31.0 41.0 68-69 35.09669197198078 35.0 35.0 39.0 30.0 41.0 70-71 34.831609638023984 35.0 35.0 39.0 30.0 41.0 72-73 34.548208457109325 35.0 35.0 38.5 30.0 40.5 74-75 34.212509627021674 35.0 35.0 37.0 29.0 40.0 76-77 32.417574357281694 34.5 32.0 35.5 26.5 38.5 78-79 33.74219752814758 35.0 34.0 36.0 29.5 39.0 80-81 33.69138519089009 35.0 34.0 36.0 30.0 39.0 82-83 33.54131367587193 35.0 34.0 36.0 30.0 37.0 84-85 33.37549051967579 35.0 34.0 35.5 29.5 37.0 86-87 33.1724428796714 35.0 34.0 35.0 29.0 36.5 88-89 33.01534822312685 35.0 34.0 35.0 29.0 36.0 90-91 32.86564345179154 35.0 34.0 35.0 29.0 36.0 92-93 32.78052224300436 35.0 34.0 35.0 29.0 36.0 94-95 32.65757142333223 35.0 34.0 35.0 27.0 36.0 96-97 32.6131587633403 35.0 34.0 35.0 27.5 35.0 98-99 32.57523746653464 35.0 34.0 35.0 27.5 35.0 100-101 31.722228334616936 34.5 32.5 35.0 23.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 2.0 15 4.0 16 11.0 17 28.0 18 53.0 19 92.0 20 110.0 21 166.0 22 284.0 23 256.0 24 156.0 25 151.0 26 127.0 27 146.0 28 177.0 29 196.0 30 223.0 31 314.0 32 331.0 33 434.0 34 732.0 35 1411.0 36 4004.0 37 7686.0 38 7667.0 39 2503.0 40 3.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.849146984045106 18.07730572239213 12.266479973469915 23.807067320092855 2 17.658708328749036 20.52297649172993 36.53867312135549 25.279642058165546 3 20.80536912751678 25.239300253053145 28.90673708145377 25.04859353797631 4 13.206440019070673 17.03157663109253 38.049657094656546 31.71232625518026 5 13.235779513697876 37.54355081233726 34.844317306634395 14.376352367330473 6 29.81259397806873 36.21227124362783 18.55356291487879 15.421571863424651 7 25.741739098544024 31.323577951369785 22.26500898522023 20.669673964865957 8 26.42388234862654 32.724538819818825 20.52664392855833 20.324934902996297 9 26.024131734330876 14.754098360655737 21.09876407378883 38.12300583122455 10-11 26.396376572413537 24.322441045952985 27.461766971063923 21.819415410569555 12-13 26.599919316389776 23.354237723255217 27.566288920673344 22.479554039681666 14-15 23.95569736311292 24.88172516228408 25.576704441266003 25.585873033337002 16-17 22.84813144093593 27.19404408259068 26.768621410496202 23.18920306597719 18-19 22.230168335350424 25.64455202259141 29.242307551252427 22.882972090805737 20-21 23.755822055965087 24.958741335680493 29.033263652033593 22.25217295632083 22-23 23.61645945648586 25.552866101881396 28.195254336744053 22.63542010488869 24-25 23.048006748083765 24.88172516228408 28.83522206329996 23.235046026332196 26-27 22.90681043019034 25.607877654307405 28.98558697326439 22.49972494223787 28-29 22.782535345570572 25.8357324922524 28.927438431775254 22.454293730401776 30-31 22.714269996699308 25.257637437195147 29.266145890637034 22.761946675468515 32-33 22.98015916675835 25.334653610591555 29.055268273003996 22.62991894964609 34-35 23.34366346982561 25.40846826692095 28.395650340161005 22.85221792309244 36-37 22.733440915425803 25.32824763441649 28.70241326193794 23.23589818821976 38-39 23.236879744746396 25.47768364689918 27.94036747717021 23.345069131184214 40-41 23.60912458282906 25.600542780650603 28.105402134448234 22.684930502072103 42-43 23.35973887849782 25.79491693255584 28.459309788388893 22.38603440055745 44-45 23.123762013058467 25.93720196610667 27.820776171960972 23.11825984887389 46-47 23.253551631731582 25.454278477295254 27.55589001872178 23.736279872251387 48-49 23.30656104448601 25.24296768988154 27.425092602779916 24.025378662852532 50-51 23.099350863681373 26.222173323064514 26.7539516631826 23.924524150071516 52-53 23.73014999816628 26.57974841383357 26.03880148164448 23.65130010635567 54-55 23.577951369787655 25.600542780650603 26.66776689771519 24.153738951846552 56-57 23.75573079039061 26.20759215110948 26.19658903355951 23.8400880249404 58-59 23.99515694080094 26.057126084643468 26.73955715360202 23.20815982095357 60-61 23.87328723150577 26.215675844232074 26.202835812682284 23.708201111579875 62-63 23.332233102284814 26.1396559944255 27.014339677999043 23.513771225290643 64-65 24.36461656947959 25.664722925147615 26.429383503869147 23.541277001503648 66-67 23.522939817361646 26.05347122895808 25.96545274507647 24.458136208603808 68-69 23.576117651373455 26.080977005171086 26.730113323798 23.612792019657462 70-71 24.271096930355373 25.721568195987825 26.146990868082298 23.860344005574504 72-73 23.568782777716653 25.545531228224593 26.852972457549416 24.032713536509334 74-75 23.939193897385117 25.69222870136062 26.44038581435435 23.928191586899917 76-77 23.70997909561008 25.490519675798584 26.271683720247918 24.527817508343418 78-79 23.87851667094597 25.48508968198658 25.95642445805671 24.679969189010748 80-81 23.27342747111682 26.009536035209972 26.609205941683477 24.107830551989732 82-83 23.2497157736458 26.183665236366306 26.654930868815786 23.911688121172112 84-85 23.289077972566567 25.79036162253356 26.685249028093594 24.23531137680628 86-87 23.026002127113358 26.66776689771519 26.47889390105255 23.827337074118898 88-89 23.367073752154617 25.719734477573624 26.013129423845676 24.900062346426083 90-91 23.464260828107236 25.63354971210621 26.06080610261488 24.841383357171672 92-93 23.13052407672278 26.21117101257931 26.550408919206365 24.107895991491546 94-95 22.877470935563135 25.859097077052844 26.704441265999197 24.558990721384824 96-97 23.115854329409178 26.394542853999344 26.26618256500532 24.223420251586166 98-99 22.20082884072322 26.748450507940003 26.66593317930099 24.384787472035793 100-101 22.558212077285823 26.55645057707481 25.883043725572946 25.002293620066425 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1.0 1 1.0 2 1.0 3 1.0 4 2.0 5 3.0 6 2.5 7 4.0 8 7.0 9 8.0 10 7.0 11 12.0 12 17.5 13 12.0 14 14.0 15 21.5 16 19.5 17 22.0 18 24.0 19 21.5 20 35.0 21 52.0 22 59.0 23 64.0 24 86.5 25 126.0 26 159.0 27 187.5 28 234.5 29 262.0 30 262.5 31 298.5 32 358.5 33 394.0 34 429.0 35 457.0 36 487.0 37 543.0 38 572.5 39 596.5 40 633.5 41 632.5 42 651.0 43 716.5 44 766.5 45 830.0 46 879.0 47 914.5 48 972.5 49 1108.0 50 1251.0 51 1174.5 52 1061.5 53 1160.0 54 1253.5 55 1196.0 56 996.5 57 847.0 58 824.0 59 765.0 60 655.0 61 534.0 62 405.5 63 277.0 64 203.5 65 157.0 66 129.0 67 98.5 68 83.0 69 71.5 70 38.0 71 24.0 72 17.0 73 15.0 74 17.0 75 14.5 76 10.0 77 5.5 78 5.0 79 5.5 80 3.0 81 0.5 82 0.0 83 0.0 84 0.0 85 0.0 86 0.0 87 0.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.46943191403528073 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0018337184142003153 30-31 0.0 32-33 0.0 34-35 0.0018337184142003153 36-37 0.0036674368284006307 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.018337184142003155 46-47 0.09535335753841641 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.007334873656801261 58-59 0.04217552352660725 60-61 0.031173213041405363 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.014669747313602523 80-81 0.007334873656801261 82-83 0.0 84-85 0.0036674368284006307 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.06418014449701104 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 27267.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 77.47093556313493 #Duplication Level Percentage of deduplicated Percentage of total 1 89.91668244650634 69.65929511864158 2 6.234614656315092 9.660028606007263 3 1.2497633024048476 2.9046099680932995 4 0.5870100359780345 1.8190486668867127 5 0.48286309411096384 1.8703927824843216 6 0.2982389698920659 1.3862911211354385 7 0.2603673546676766 1.4119631789342428 8 0.1325506532853626 0.8215058495617412 9 0.1609543647036546 1.122235669490593 >10 0.6627532664268131 8.438772142149851 >50 0.014201855709145995 0.9058568966149557 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 86 0.3153995672424542 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 86 0.3153995672424542 No Hit GTCTAATGTTATTAAATATGTTAAATAAACTTGATGGCGGTGCCAGCGTC 75 0.2750577621300473 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 44 0.16136722044962776 No Hit ACCAAAGGCCGTGCAATCGCGCAACGATAAACCTAAATGTTGGGTCAGCA 44 0.16136722044962776 No Hit ACATTACCCTCACTTTTGCCACGGGGCGTCATGCGCTGGAGATGCAGCAT 43 0.1576997836212271 No Hit GCATATTCTCGGGGCGCTATCGCTGGATGCGTATTTGATTACCGGCAACG 43 0.1576997836212271 No Hit GAACAAGACCGCAAGGAATTAATCGAAATGTTAGCCTCCCGCCCCGGTGA 39 0.1430300363076246 No Hit ATACAAAACCGTGCGCGGCTTAACCCGCGGTCTAATGTTATTAAATATGT 39 0.1430300363076246 No Hit GCCCATAATAAATCCGCTACCGACGCTGACTAACATTTCGCGATCGTTCA 39 0.1430300363076246 No Hit ATCTTACACGCTTGCAGATCCAGCTATACGAAGCATTAGGCGAGCGTGCA 37 0.13569516265082335 No Hit GCATTAGGCGAGCGTGCACATTTGTGTTTTTCCGCCACGGATTGCCTCGA 36 0.1320277258224227 No Hit TCGCACCACTGTGCGGCGACTGCTGGAGACGCTGCAGGAAGAGGGATATG 35 0.12836028899402208 No Hit TCATTTAGGTGAGAAAACCCTCTCTACTTTGGCGCGACTGCGTGAACGCG 32 0.11735797850882018 No Hit GTCTTGTTCCGGGCAAAAGGCCAGCCAGGTCAGGCCCGAGGCGGTTTTCA 31 0.11369054168041955 No Hit CTTTTACATCGTGATGATTTACCTGCGGATGTCGCGGAGCTGGTGCTGTA 29 0.10635566802361829 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10-11 0.0 0.0 0.0 0.0 0.0 12-13 0.0 0.0 0.0 0.0 0.0 14-15 0.0 0.0 0.0 0.0 0.0 16-17 0.0 0.0 0.0 0.0 0.0 18-19 0.0 0.0 0.0 0.0 0.0 20-21 0.0 0.0 0.0 0.0 0.0 22-23 0.0 0.0 0.0 0.0 0.0 24-25 0.0 0.0 0.0 0.0 0.0 26-27 0.0 0.0 0.0 0.0 0.0 28-29 0.0 0.0 0.0 0.01833718414200315 0.0 30-31 0.0 0.0 0.0 0.049510397183408515 0.0 32-33 0.0 0.0 0.0 0.07701617339641326 0.0 34-35 0.0 0.0 0.0 0.11735797850882018 0.0 36-37 0.0 0.0 0.0 0.168702094106429 0.0 38-39 0.0 0.0 0.0 0.2402171122602413 0.0 40-41 0.0 0.0 0.0 0.2878937910294495 0.0 42-43 0.0 0.0 0.0 0.33006931455605676 0.0 44-45 0.0 0.0 0.0 0.4144203616092713 0.0 46-47 0.0 0.0 0.0 0.5134411559760883 0.0 48-49 0.0 0.0 0.0 0.6197968239997066 0.0 50-51 0.0 0.0 0.0 0.7114827447097224 0.0 52-53 0.0 0.0 0.0 0.7628268603073312 0.0 54-55 0.0 0.0 0.0 0.8636813730883486 0.0 56-57 0.0 0.0 0.0 0.9700370411119669 0.0 58-59 0.0 0.0 0.0 1.0965636116917885 0.0 60-61 0.0 0.0 0.0 1.2212564638574102 0.0 62-63 0.0 0.0 0.0 1.3789562474786372 0.0 64-65 0.0 0.0 0.0 1.5128176917152603 0.0 66-67 0.0 0.0 0.0 1.698023251549492 0.0 68-69 0.0 0.0 0.0 1.866725345655921 0.0 70-71 0.0 0.0 0.0 2.0170902556203467 0.0 72-73 0.0 0.0 0.0 2.1839586313125756 0.0 74-75 0.0 0.0 0.0 2.3691641911468073 0.0 76-77 0.0 0.0 0.0 2.594711556093446 0.0 78-79 0.0 0.0 0.0 2.8129240473832837 0.0 80-81 0.0 0.0 0.0 3.111820148897935 0.0 82-83 0.0 0.0 0.0 3.4198848424835884 0.0 84-85 0.0 0.0 0.0 3.6949426046136358 0.0 86-87 0.0 0.0 0.0 4.004841016613489 0.0 88-89 0.0 0.0 0.0 4.344078923240547 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGGGATG 15 6.549208E-4 94.99632 6 TAATGCT 20 0.0020526617 71.247246 4 GTGGTAT 25 0.004897733 57.207737 1 CTACAGA 25 0.004969727 56.997795 4 GGTATCA 65 4.089634E-8 51.34028 1 TACATGG 165 1.8189894E-12 34.54412 2 ACATGGG 165 1.8189894E-12 34.54412 3 CATGGGG 85 1.5751637E-5 33.528114 4 ATGGGGG 85 1.5751637E-5 33.528114 5 GTACATG 175 3.6379788E-12 32.690136 1 AAATATG 60 0.0038849548 31.665442 7 GTATCAA 110 2.5333084E-6 30.337435 1 CATGGGA 85 6.248266E-4 27.940096 4 AATCCAC 35 0.008324412 27.141808 92-93 AATTCGT 35 0.008324412 27.141808 12-13 CAACGCA 155 1.3286808E-6 24.515182 4 ATCAACG 145 2.2287564E-5 22.93015 2 TGGGGGG 105 0.0021425479 22.618174 6 AACGCAG 170 2.9673392E-6 22.352077 5 TCAACGC 150 2.896387E-5 22.16581 3 >>END_MODULE