##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3224484_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 621170 Sequences flagged as poor quality 0 Sequence length 101 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.19494180337106 34.0 33.0 34.0 31.0 34.0 2 33.33302316596101 34.0 34.0 34.0 31.0 34.0 3 33.45205821272759 34.0 34.0 34.0 31.0 34.0 4 36.6450971553681 37.0 37.0 37.0 35.0 37.0 5 36.686288777629315 37.0 37.0 37.0 35.0 37.0 6 36.72834650739733 37.0 37.0 37.0 37.0 37.0 7 36.709082859764635 37.0 37.0 37.0 36.0 37.0 8 36.69149991145741 37.0 37.0 37.0 36.0 37.0 9 38.54644783231644 39.0 39.0 39.0 38.0 39.0 10-11 38.584259542476296 39.0 39.0 39.0 37.5 39.0 12-13 38.59515913518038 39.0 39.0 39.0 38.0 39.0 14-15 40.24872418178599 41.0 40.0 41.0 39.0 41.0 16-17 40.25829966031843 41.0 40.0 41.0 39.0 41.0 18-19 40.25974853904728 41.0 40.0 41.0 39.0 41.0 20-21 40.26013893137144 41.0 40.0 41.0 39.0 41.0 22-23 40.20249126648099 41.0 40.0 41.0 39.0 41.0 24-25 40.19533300062785 41.0 40.0 41.0 39.0 41.0 26-27 40.156008822061594 41.0 40.0 41.0 39.0 41.0 28-29 40.128715971473184 41.0 40.0 41.0 38.5 41.0 30-31 40.0840373810712 41.0 40.0 41.0 38.0 41.0 32-33 40.06021539997102 41.0 40.0 41.0 38.0 41.0 34-35 40.00347167442085 41.0 40.0 41.0 38.0 41.0 36-37 39.93711705330264 41.0 40.0 41.0 38.0 41.0 38-39 39.883659867669074 41.0 40.0 41.0 38.0 41.0 40-41 39.80175958272292 41.0 40.0 41.0 38.0 41.0 42-43 39.75248402208735 41.0 40.0 41.0 38.0 41.0 44-45 39.60424923933867 41.0 40.0 41.0 37.0 41.0 46-47 39.46500957869826 41.0 40.0 41.0 37.0 41.0 48-49 39.44219698311251 41.0 40.0 41.0 36.0 41.0 50-51 39.38430139897291 41.0 39.0 41.0 36.0 41.0 52-53 39.26170854999437 41.0 39.0 41.0 35.5 41.0 54-55 39.16029267350322 41.0 39.0 41.0 35.0 41.0 56-57 39.03439879582079 41.0 39.0 41.0 35.0 41.0 58-59 38.86882978894666 40.0 38.0 41.0 35.0 41.0 60-61 38.70924465122269 40.0 38.0 41.0 35.0 41.0 62-63 38.54340116232271 40.0 37.0 41.0 35.0 41.0 64-65 38.340978315115024 40.0 37.0 41.0 35.0 41.0 66-67 38.10034612102967 40.0 36.0 41.0 34.5 41.0 68-69 37.864977381393174 39.0 36.0 41.0 34.0 41.0 70-71 37.5703076452501 39.0 35.5 41.0 34.0 41.0 72-73 37.26219231450328 38.5 35.0 40.5 34.0 41.0 74-75 36.9128869713605 37.5 35.0 40.0 34.0 41.0 76-77 34.89433327430494 35.5 33.0 38.0 30.5 39.0 78-79 36.11610750680168 36.0 35.0 39.0 33.5 40.0 80-81 35.91886279118438 36.0 35.0 38.5 34.0 39.0 82-83 35.58010850491814 36.0 35.0 37.0 34.0 39.0 84-85 35.250717194970775 35.0 35.0 37.0 33.5 39.0 86-87 34.94860827148768 35.0 35.0 36.5 33.0 37.0 88-89 34.69595199381812 35.0 35.0 36.0 33.0 37.0 90-91 34.49534426968463 35.0 35.0 36.0 33.0 37.0 92-93 34.34801906080461 35.0 35.0 35.5 33.0 36.0 94-95 34.20871259075615 35.0 35.0 35.0 33.0 36.0 96-97 34.121037719142905 35.0 35.0 35.0 33.0 36.0 98-99 34.047616594491046 35.0 35.0 35.0 33.0 36.0 100-101 33.30647568298534 34.5 34.0 35.0 30.5 35.5 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 0.0 12 0.0 13 1.0 14 7.0 15 26.0 16 59.0 17 119.0 18 185.0 19 309.0 20 423.0 21 582.0 22 775.0 23 794.0 24 840.0 25 1023.0 26 1296.0 27 1623.0 28 2205.0 29 2648.0 30 3034.0 31 3776.0 32 4692.0 33 6523.0 34 10414.0 35 19147.0 36 45001.0 37 109838.0 38 261766.0 39 144039.0 40 24.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.63280623204535 21.2526527601646 14.267805843836538 22.846735163953518 2 14.179693159682536 20.993286861889658 42.82241576380057 22.004604214627236 3 18.06542492393387 27.18273580501312 30.799942044850848 23.951897226202167 4 11.454352270714942 17.87385095867476 41.48815944105478 29.183637329555516 5 12.072057568781492 39.07159070785775 36.96975063187211 11.886601091488643 6 28.15396751291917 39.648727401516496 19.819373118469986 12.377931967094353 7 25.211133828098585 33.22729687525155 24.41505545985801 17.14651383679186 8 23.28267623999871 38.20290741664923 21.58958095207431 16.92483539127775 9 24.13574383824074 17.819276526554727 21.955825297422606 36.08915433778193 10-11 23.208944411352768 27.46301334578296 30.59299386641338 18.73504837645089 12-13 23.631212067549946 25.0364634480094 30.488674597936154 20.8436498865045 14-15 20.893153243073552 27.38767165188274 27.28150103836309 24.437674066680618 16-17 20.7759550525621 30.591384001159106 28.101968865205983 20.530692081072814 18-19 20.807347425020524 29.67255340727981 29.148783746800394 20.371315420899272 20-21 21.417112536212226 28.680244927068433 29.38118646509902 20.52145607162032 22-23 21.10976954593385 28.708716685582736 29.19538286928594 20.986130899197477 24-25 21.061519786981258 28.779907464349304 28.94161947047971 21.216953278189727 26-27 20.959150998907678 29.198096766741234 28.96103781110466 20.88171442324643 28-29 20.95979354223819 28.860537975091123 29.232593408291795 20.947075074378887 30-31 21.27544313945823 28.434335832134643 29.083519743964764 21.206701284442367 32-33 20.87137316897656 28.89173477749212 29.193182531645977 21.043709521885347 34-35 21.414179792302757 28.843449471097305 28.6207154695888 21.12165526701114 36-37 21.105194737244577 28.46862510715881 29.004801519743385 21.421378635853223 38-39 21.040133940789154 28.778112272002833 28.911248128531643 21.27050565867637 40-41 21.292641305922693 28.594668126277828 29.126165139977783 20.986525427821693 42-43 21.141394465283255 28.469581596020415 29.12729204565578 21.261731893040555 44-45 21.319734024568916 28.441982901579433 29.042359646439444 21.195923427412215 46-47 21.56673519233372 28.35593176647999 28.717705399779604 21.35962764140669 48-49 21.027695472952903 28.379267072515983 29.140818122033302 21.45221933249781 50-51 21.142762850749392 28.49195872305488 28.99761739942367 21.36766102677206 52-53 21.213113962361348 28.637973501617914 28.779722137257114 21.369190398763624 54-55 21.10291868570601 28.48535827551234 28.958739153532846 21.452983885248806 56-57 21.25194406251912 28.687681325085894 28.59277243440097 21.467602177994017 58-59 21.285802861813234 28.481644616586276 28.838525771618606 21.394026749981883 60-61 21.372135546875942 28.56864502238744 28.62379840111563 21.435421029620986 62-63 20.989342692016677 28.56907126873481 28.930807991371122 21.510778047877395 64-65 21.284833459439444 28.48632419466491 28.690213629119242 21.538628716776405 66-67 21.006165783923887 28.746558913018983 28.549833378946182 21.69744192411095 68-69 21.372329636009464 28.338377577796734 28.79002527488449 21.499267511309302 70-71 21.394787256306646 28.24854709660801 28.789944781621777 21.56672086546356 72-73 21.05422026176409 28.42635671394304 28.832928183911005 21.686494840381858 74-75 21.164818004733004 28.29370381699052 28.701160712848335 21.840317465428143 76-77 21.00368739933303 28.35981161341631 28.75970246446421 21.87679852278645 78-79 21.365741430205574 28.073296566447254 28.407370228482236 22.153591774864942 80-81 20.97906882767081 28.472093648521806 28.45454501546373 22.09429250834365 82-83 20.93486004064959 28.535689131265972 28.571911536836176 21.957539291248267 84-85 21.11976431098393 28.33959181045065 28.567150843385132 21.97349303518029 86-87 20.624386238871807 28.593380234074406 28.764186937553326 22.018046589500457 88-89 21.21681665244619 27.932611040455914 28.3890883333065 22.461483973791392 90-91 21.060659722781203 28.155738364698873 28.31229776067743 22.471304151842492 92-93 21.090764203036205 28.059790395543892 28.66155802759309 22.18788737382681 94-95 21.280969782829175 27.826842893249836 28.28879372796497 22.603393595956017 96-97 21.187517104818326 27.925608126599805 28.554260508395444 22.332614260186425 98-99 20.742308868747685 28.086997118341195 28.57679862195534 22.593895390955776 100-101 20.94379242269374 28.07745003515843 28.385458827585154 22.59329871456268 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 1.0 3 2.0 4 1.0 5 2.0 6 4.5 7 6.0 8 11.0 9 14.0 10 12.0 11 11.0 12 9.5 13 12.5 14 18.5 15 20.5 16 20.5 17 23.0 18 37.0 19 52.0 20 51.0 21 57.0 22 75.0 23 96.0 24 115.5 25 145.0 26 203.5 27 294.0 28 506.0 29 1035.5 30 2243.5 31 4673.0 32 8960.0 33 15033.0 34 22505.0 35 30631.0 36 37964.0 37 42592.5 38 44701.5 39 44757.0 40 40398.5 41 33454.5 42 28076.5 43 23960.0 44 20357.0 45 17665.5 46 15505.5 47 13773.5 48 12717.0 49 12770.5 50 13419.5 51 13277.5 52 12684.5 53 12742.0 54 13166.0 55 12859.5 56 11349.0 57 9980.5 58 9366.5 59 8644.0 60 7084.5 61 5451.5 62 4472.0 63 3234.0 64 2102.5 65 1452.0 66 1069.0 67 913.5 68 721.0 69 489.0 70 340.5 71 222.5 72 147.5 73 131.0 74 93.0 75 66.5 76 49.0 77 25.0 78 12.5 79 7.0 80 9.0 81 4.5 82 1.5 83 1.5 84 2.0 85 2.0 86 1.0 87 0.5 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.4742663039103627 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 8.854258898530193E-4 22-23 8.049326271391085E-4 24-25 6.439461017112867E-4 26-27 0.002656277669559058 28-29 0.004185649661123364 30-31 8.854258898530193E-4 32-33 1.6098652542782167E-4 34-35 0.004105156398409453 36-37 0.0020123315678477714 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0096591915256693 46-47 0.07695155915449878 48-49 5.634528389973759E-4 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.007727353220535442 58-59 0.0378318334755381 60-61 0.028092148687154882 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 8.049326271391084E-5 78-79 0.007968833008677173 80-81 0.006278474491685045 82-83 0.0012073989407086626 84-85 0.0020123315678477714 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.06576299563726516 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 621170.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 53.14345873741144 #Duplication Level Percentage of deduplicated Percentage of total 1 72.11930211408021 38.326691560705314 2 14.007322982317252 14.887951818647437 3 5.392097546089385 8.59664140346096 4 2.8140147787691303 5.9818591312793306 5 1.603701094543164 4.26131114724981 6 1.0125359723132963 3.228579819886586 7 0.691081047254474 2.5708505983282657 8 0.48689601125595183 2.0700270466872714 9 0.33710927310916916 1.6123637470928303 >10 1.42356851639525 12.662396632225533 >50 0.07926688925877598 2.8848471971839786 >100 0.03310377461391772 2.91647989725263 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.609865254278217E-4 2 0.0 0.0 0.0 0.0 1.609865254278217E-4 3 0.0 0.0 0.0 0.0 1.609865254278217E-4 4 0.0 0.0 0.0 0.0 1.609865254278217E-4 5 0.0 0.0 0.0 0.0 1.609865254278217E-4 6 0.0 0.0 0.0 0.0 1.609865254278217E-4 7 0.0 0.0 0.0 0.0 1.609865254278217E-4 8 0.0 0.0 0.0 0.0 1.609865254278217E-4 9 0.0 0.0 0.0 0.0 1.609865254278217E-4 10-11 0.0 0.0 0.0 0.0 1.609865254278217E-4 12-13 0.0 0.0 0.0 0.0 3.219730508556434E-4 14-15 0.0 0.0 0.0 0.0 3.219730508556434E-4 16-17 0.0 0.0 0.0 0.0 3.219730508556434E-4 18-19 0.0 0.0 0.0 1.609865254278217E-4 3.219730508556434E-4 20-21 0.0 0.0 0.0 1.609865254278217E-4 4.8295957628346505E-4 22-23 0.0 0.0 0.0 4.8295957628346505E-4 4.8295957628346505E-4 24-25 0.0 0.0 0.0 8.049326271391084E-4 4.8295957628346505E-4 26-27 0.0 0.0 0.0 0.0016903585169921278 4.8295957628346505E-4 28-29 0.0 0.0 0.0 0.0035417035594120776 4.8295957628346505E-4 30-31 0.0 0.0 0.0 0.009256725212099748 4.8295957628346505E-4 32-33 0.0 0.0 0.0 0.02382600576331761 4.8295957628346505E-4 34-35 0.0 0.0 0.0 0.04322488207737013 4.8295957628346505E-4 36-37 0.0 0.0 0.0 0.07558317368836229 4.8295957628346505E-4 38-39 0.0 0.0 0.0 0.12677688877440957 4.8295957628346505E-4 40-41 0.0 0.0 0.0 0.18722732907255663 4.8295957628346505E-4 42-43 0.0 0.0 0.0 0.2488046750486984 4.8295957628346505E-4 44-45 0.0 0.0 0.0 0.32350242284720765 4.8295957628346505E-4 46-47 0.0 0.0 0.0 0.40423716534926024 4.8295957628346505E-4 48-49 0.0 0.0 0.0 0.49495307242783776 4.8295957628346505E-4 50-51 0.0 0.0 0.0 0.595891623871082 4.8295957628346505E-4 52-53 0.0 0.0 0.0 0.701498784551733 4.8295957628346505E-4 54-55 0.0 0.0 0.0 0.8120965275206465 4.8295957628346505E-4 56-57 0.0 0.0 0.0 0.9481301415071559 4.8295957628346505E-4 58-59 0.0 0.0 0.0 1.1017917800280115 4.8295957628346505E-4 60-61 0.0 0.0 0.0 1.27114960477808 4.8295957628346505E-4 62-63 0.0 0.0 0.0 1.4432442004604216 4.8295957628346505E-4 64-65 0.0 0.0 0.0 1.6200878986428835 4.8295957628346505E-4 66-67 0.0 0.0 0.0 1.8199526699615243 4.8295957628346505E-4 68-69 0.0 0.0 0.0 2.0500024147978815 4.8295957628346505E-4 70-71 0.0 0.0 0.0 2.311525025355378 5.634528389973759E-4 72-73 0.0 0.0 0.0 2.5790041373537034 7.244393644251976E-4 74-75 0.0 0.0 0.0 2.843987958207898 8.049326271391085E-4 76-77 0.0 0.0 0.0 3.13464912986783 8.049326271391085E-4 78-79 0.0 0.0 0.0 3.4627396686897307 8.049326271391085E-4 80-81 0.0 0.0 0.0 3.8322037445465815 8.049326271391085E-4 82-83 0.0 0.0 0.0 4.227345171209169 8.049326271391085E-4 84-85 0.0 0.0 0.0 4.6157251638037895 8.049326271391085E-4 86-87 0.0 0.0 0.0 5.025918830593879 8.854258898530193E-4 88-89 0.0 0.0 0.0 5.487628185520872 9.659191525669301E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GAGTACG 50 0.0015848841 38.147034 1 ATAACGC 50 0.0016166028 37.993496 3 GTATCAA 825 0.0 33.523148 1 GGTATCA 545 0.0 33.24741 1 TCAACGC 800 0.0 32.65066 4 TAACGCT 60 0.0039528767 31.661247 4 ATCAACG 830 0.0 31.470518 3 CAACGCA 910 0.0 28.18199 5 AACGCAG 930 0.0 28.08659 6 CGCAGAG 935 0.0 27.42846 8 TAGCGTT 110 9.4807794E-5 25.904657 6 ACCGTGC 110 9.4807794E-5 25.904657 8 ACGCAGA 1000 0.0 25.64561 7 GTACATG 1775 0.0 24.446335 1 ACATGGG 1695 0.0 23.815983 3 CTTACAC 500 0.0 23.745935 3 TATCAAC 1125 0.0 23.640396 2 ATAGCGT 125 2.256897E-4 22.796099 5 GTGTAGC 440 0.0 22.758171 1 GAGTACA 1195 0.0 22.345541 1 >>END_MODULE