##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3224483_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1024899 Sequences flagged as poor quality 0 Sequence length 101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.40388077264199 34.0 31.0 34.0 31.0 34.0 2 32.56375701410578 34.0 31.0 34.0 31.0 34.0 3 32.712446787439546 34.0 33.0 34.0 31.0 34.0 4 35.980382457198225 37.0 37.0 37.0 35.0 37.0 5 36.00602205680755 37.0 37.0 37.0 35.0 37.0 6 36.11687590679667 37.0 37.0 37.0 35.0 37.0 7 36.08006349893989 37.0 37.0 37.0 35.0 37.0 8 36.117205695390474 37.0 37.0 37.0 35.0 37.0 9 37.87000670309953 39.0 39.0 39.0 37.0 39.0 10-11 37.95510777159505 39.0 39.0 39.0 37.0 39.0 12-13 37.975272197553124 39.0 39.0 39.0 37.0 39.0 14-15 39.51135380169168 41.0 40.0 41.0 38.0 41.0 16-17 39.35392267921034 41.0 40.0 41.0 37.5 41.0 18-19 39.460250717387765 41.0 40.0 41.0 37.0 41.0 20-21 39.538680396800075 41.0 40.0 41.0 38.0 41.0 22-23 39.50160113337998 41.0 40.0 41.0 37.5 41.0 24-25 39.46339980817622 41.0 40.0 41.0 37.0 41.0 26-27 39.33159852824522 41.0 40.0 41.0 37.0 41.0 28-29 39.270921329809084 41.0 40.0 41.0 36.5 41.0 30-31 39.208934734056726 41.0 40.0 41.0 36.0 41.0 32-33 39.03747198504438 41.0 39.5 41.0 36.0 41.0 34-35 39.05629335183272 41.0 39.0 41.0 36.0 41.0 36-37 39.07942050875257 41.0 39.0 41.0 36.0 41.0 38-39 38.99956873799272 41.0 39.0 41.0 35.5 41.0 40-41 38.94104931315184 41.0 39.0 41.0 35.0 41.0 42-43 38.836644879153944 41.0 39.0 41.0 35.0 41.0 44-45 38.71579687364316 41.0 39.0 41.0 35.0 41.0 46-47 38.605356722955136 40.0 39.0 41.0 35.0 41.0 48-49 38.45590150834375 40.0 38.0 41.0 34.5 41.0 50-51 37.24157063281358 39.0 36.5 40.0 32.5 40.5 52-53 37.586932956320574 39.5 37.5 40.5 33.5 40.5 54-55 38.11034062868634 40.0 38.0 41.0 34.0 41.0 56-57 38.04222220921281 40.0 37.0 41.0 34.0 41.0 58-59 37.963604706414976 40.0 37.0 41.0 34.0 41.0 60-61 37.79011444054487 40.0 36.5 41.0 33.5 41.0 62-63 37.56895996581126 40.0 36.0 41.0 33.0 41.0 64-65 37.38677567252968 40.0 35.0 41.0 33.0 41.0 66-67 37.18979772641012 39.0 35.0 41.0 33.0 41.0 68-69 36.92308900681921 39.0 35.0 41.0 32.5 41.0 70-71 36.64703595183526 38.5 35.0 41.0 32.0 41.0 72-73 36.324613937568486 37.5 35.0 40.0 32.0 41.0 74-75 35.98925601449508 37.0 35.0 39.5 32.0 41.0 76-77 35.5811801943411 36.5 35.0 39.0 31.0 41.0 78-79 35.24591935400464 36.0 35.0 39.0 31.0 39.5 80-81 34.84586822701554 36.0 35.0 37.0 31.0 39.0 82-83 34.49141622735509 35.0 35.0 37.0 31.0 39.0 84-85 34.17486893830514 35.0 34.5 37.0 30.5 38.0 86-87 33.87608583870215 35.0 34.0 36.0 30.0 37.0 88-89 33.66075974315518 35.0 34.0 36.0 30.0 37.0 90-91 33.45130056717784 35.0 34.0 35.5 30.0 36.5 92-93 33.27184678685412 35.0 34.0 35.0 29.0 36.0 94-95 33.122096909061284 35.0 34.0 35.0 29.0 36.0 96-97 32.98383499252121 35.0 34.0 35.0 29.0 36.0 98-99 32.918616370978995 35.0 34.0 35.0 29.0 35.5 100-101 31.827634235178294 34.5 32.0 35.0 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 6 8.0 7 136.0 8 610.0 9 473.0 10 411.0 11 760.0 12 1097.0 13 1249.0 14 1351.0 15 1414.0 16 1572.0 17 1640.0 18 1830.0 19 2185.0 20 2538.0 21 3294.0 22 3789.0 23 3882.0 24 3866.0 25 4166.0 26 4460.0 27 4815.0 28 5161.0 29 5964.0 30 7321.0 31 9273.0 32 12428.0 33 17331.0 34 27364.0 35 48322.0 36 100399.0 37 194353.0 38 389229.0 39 162189.0 40 19.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.02266910706311 21.04265384318466 14.418404211345107 22.516272838407122 2 14.453814473426164 21.030072231507692 41.52594548340861 22.99016781165754 3 19.270795727965123 27.523519413639214 29.94971206890832 23.255972789487345 4 12.318969966796727 17.615004015029772 41.310704762127784 28.75532125604572 5 12.655100648941994 39.45520485433199 35.57931074183895 12.310383754887066 6 27.115940204839696 39.45559513669152 20.305317889860365 13.123146768608418 7 25.34757083380899 32.97290757430732 23.76058518936988 17.918936402513808 8 24.116815413030942 36.724399184700154 21.947723629352748 17.21106177291616 9 25.57032449051077 16.95064586851973 21.954943853004053 35.52408578796545 10-11 24.270781803865553 27.053592597904768 29.261761402830917 19.413864195398766 12-13 24.601155821207747 24.664283992861733 29.624187358949516 21.110372826981 14-15 21.961163447042996 26.438655200534495 26.761683102746687 24.838498249675826 16-17 21.313737973000155 29.66214065462811 27.665956487012693 21.358164885359038 18-19 21.372088313728934 29.02339108518337 28.812585853114626 20.791934747973073 20-21 22.75004868202269 27.387115052090984 28.442551064879595 21.42028520100673 22-23 22.504204347136284 27.868829251028203 28.215721451323546 21.411244950511964 24-25 21.62677656206696 28.15072623866533 28.464661979912798 21.757835219354916 26-27 21.818345027168533 28.60994107712077 28.38840705279252 21.18330684291818 28-29 21.59368874396404 28.68209452833889 28.425971729897288 21.298244997799785 30-31 21.76780346160939 27.888650491414275 28.661702275053447 21.681843771922892 32-33 21.666720330491103 28.07198562980352 28.615990453693485 21.64530358601189 34-35 22.029536568969235 27.977195801732655 28.35591604636164 21.637351582936464 36-37 21.703309974718827 27.94567646049896 28.756372139277264 21.59464142550495 38-39 21.587219499581643 28.165498601004547 28.232045411855967 22.015236487557843 40-41 22.060625102759992 27.85104399274228 28.666879057647566 21.421451846850164 42-43 21.809116322637614 28.01412869012016 28.57420245593322 21.602552531309 44-45 21.820269167866915 27.99720527562774 28.21242052014661 21.97010503635874 46-47 22.04373308979714 27.74483144192745 28.05295936477643 22.158476103498977 48-49 21.467529971245945 27.76146722750242 28.47563516014749 22.295367641104146 50-51 21.39820606713442 28.15116416349318 28.350891160982695 22.099738608389703 52-53 21.904255931560083 27.999441896225875 28.063204276714092 22.03309789549995 54-55 21.75428993491066 27.892699670894398 28.163750769588024 22.189259624606912 56-57 21.649255194902132 27.95041267480991 28.170727066764627 22.229605063523334 58-59 21.77773614126099 28.149050272678522 28.029605515146987 22.043608070913496 60-61 21.60608673291888 28.125669389848255 28.32606549786015 21.942178379372717 62-63 21.527826238447314 28.060134716052467 28.277292737308578 22.134746308191637 64-65 21.87853549921859 27.696399269448115 28.119072929265126 22.305992302068173 66-67 21.466909203045496 27.867498238553523 28.03027345846597 22.635319099935007 68-69 21.604811791210647 27.743270312489326 28.73668527337816 21.915232622921867 70-71 21.84166439815045 27.76863866585878 28.396261485278064 21.993435450712703 72-73 21.792391250259783 27.759271889230057 28.412360632608674 22.03597622790148 74-75 21.743996237678054 27.708974250145623 28.426264441666937 22.12076507050939 76-77 21.779316791215525 27.64257746373057 27.914555483028085 22.66355026202582 78-79 21.704586651911466 27.203289472721178 28.365603013886187 22.72652086148117 80-81 21.776716473863303 27.672843305755595 28.13095366520016 22.419486555180942 82-83 21.382540213250422 27.89719660380766 28.394471791542706 22.325791391399207 84-85 21.61765043170105 27.444748462707015 28.65325765572152 22.284343449870413 86-87 21.358736586630243 27.58696266588695 28.534776523973093 22.519524223509706 88-89 21.713744989880936 27.52931404619485 28.121768403052457 22.63517256087176 90-91 21.634668391714694 27.226048615522114 28.346061416783506 22.793221575979683 92-93 21.770453509849514 27.101797003140877 28.66613717016645 22.46161231684316 94-95 21.79966025920603 27.091791483843775 28.407238176639844 22.701310080310353 96-97 21.657207197977556 27.30488565214719 28.3751374525685 22.662769697306757 98-99 21.328463221942627 27.308416212065477 28.394580496852832 22.96854006913906 100-101 21.72143909274333 27.067522019110722 28.260746487630932 22.950292400515007 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1.0 1 1.0 2 1.0 3 0.5 4 0.0 5 2.0 6 5.5 7 5.0 8 7.0 9 16.0 10 21.5 11 25.0 12 27.5 13 40.5 14 44.5 15 46.5 16 55.5 17 53.5 18 55.0 19 59.5 20 78.5 21 101.0 22 121.5 23 139.0 24 166.0 25 224.0 26 297.0 27 373.0 28 473.0 29 646.0 30 1015.0 31 2035.5 32 4608.0 33 9776.0 34 18735.0 35 31571.0 36 48373.0 37 62922.5 38 71976.5 39 75486.0 40 72570.0 41 67110.0 42 59610.0 43 50832.0 44 42833.0 45 36785.0 46 32790.5 47 28411.5 48 25088.0 49 23992.5 50 23756.0 51 22721.0 52 21543.5 53 22060.5 54 23206.5 55 23453.5 56 19925.5 57 16602.5 58 15767.0 59 15076.5 60 12894.0 61 9838.5 62 7903.0 63 5751.0 64 3571.0 65 2421.0 66 2033.5 67 1780.5 68 1417.5 69 977.0 70 604.5 71 425.0 72 341.5 73 306.5 74 240.0 75 157.5 76 118.5 77 87.5 78 67.0 79 51.5 80 44.5 81 32.5 82 20.0 83 15.5 84 11.5 85 9.0 86 7.5 87 6.0 88 3.0 89 3.0 90 4.5 91 4.5 92 5.5 93 4.5 94 5.0 95 6.5 96 3.0 97 3.5 98 3.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.1529906849357839 2 0.0 3 9.757058988251525E-5 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.036540185911001964 16-17 0.07269008946247386 18-19 0.025026856304865164 20-21 0.03839402711876975 22-23 0.06454294520728383 24-25 0.016294288510380044 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.02180702683874216 38-39 0.0055127383283621115 40-41 0.005805450098009658 42-43 0.0033174000560055187 44-45 0.010830335476959193 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.015367367906496152 60-61 0.017416350294028972 62-63 0.02922239166981332 64-65 0.045663036065017135 66-67 0.016879712049675137 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.017123638524381427 80-81 0.056834868606565135 82-83 0.050395209674319125 84-85 0.028246685770988166 86-87 0.058005715685155314 88-89 0.03390577998417405 90-91 0.0 92-93 0.002536835336945397 94-95 0.0 96-97 0.0 98-99 7.80564719060122E-4 100-101 0.043711624267366835 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 1024899.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 36.027575667934094 #Duplication Level Percentage of deduplicated Percentage of total 1 63.484746105737436 22.8720149408404 2 15.007019581565965 10.81333067050073 3 6.695009870852228 7.236149241590831 4 3.8231262584723495 5.509518822607133 5 2.435814083214469 4.38782380980144 6 1.7600004716434956 3.804513010064144 7 1.2124447315848297 3.057701101725235 8 0.8902450428709612 2.5658696516029433 9 0.707549169592373 2.294215312164584 >10 3.657734381147553 23.37791365268054 >50 0.20665645406072408 5.114307656365484 >100 0.11443957601874506 7.537144486387162 >500 0.004390966937994368 1.0590226353121475 >1k 8.23306300873944E-4 0.3704750083572605 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TCGCACCACTGTGCGGCGACTGCTGGAGACGCTGCAGGAAGAGGGATATG 1421 0.13864780822305417 No Hit GCCCATAATAAATCCGCTACCGACGCTGACTAACATTTCGCGATCGTTCA 1179 0.11503572547148548 No Hit ACCAAAGGCCGTGCAATCGCGCAACGATAAACCTAAATGTTGGGTCAGCA 1147 0.111913466595245 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10-11 0.0 0.0 0.0 0.0 0.0 12-13 0.0 0.0 0.0 0.0 0.0 14-15 0.0 0.0 0.0 4.878529494125762E-5 0.0 16-17 0.0 0.0 0.0 2.9271176964754575E-4 0.0 18-19 0.0 0.0 0.0 3.4149706458880334E-4 0.0 20-21 0.0 0.0 0.0 6.342088342363491E-4 0.0 22-23 0.0 0.0 0.0 0.0012684176684726982 0.0 24-25 0.0 0.0 0.0 0.0019514117976503049 0.0 26-27 0.0 0.0 0.0 0.0032198294661230035 0.0 28-29 0.0 0.0 0.0 0.0055127383283621115 0.0 30-31 0.0 0.0 0.0 0.013708667878493393 0.0 32-33 0.0 0.0 0.0 0.03171044171181746 0.0 34-35 0.0 0.0 0.0 0.05571280682291621 0.0 36-37 0.0 0.0 0.0 0.09581431926462998 0.0 38-39 0.0 0.0 0.0 0.16362587923297808 0.0 40-41 0.0 0.0 0.0 0.24343862175687553 0.0 42-43 0.0 0.0 0.0 0.3248124937188933 0.0 44-45 0.0 0.0 0.0 0.41833390412128413 0.0 46-47 0.0 0.0 0.0 0.5270763265453473 0.0 48-49 0.0 0.0 0.0 0.6395752166798875 0.0 50-51 0.0 0.0 0.0 0.7673926894259825 0.0 52-53 0.0 0.0 0.0 0.8960395121860788 0.0 54-55 0.0 0.0 0.0 1.0353703145383106 0.0 56-57 0.0 0.0 0.0 1.1996791879004662 0.0 58-59 0.0 0.0 0.0 1.3784772938601755 0.0 60-61 0.0 0.0 0.0 1.571715847122497 0.0 62-63 0.0 0.0 0.0 1.7691011504548253 0.0 64-65 0.0 0.0 0.0 1.9754141627614037 0.0 66-67 0.0 0.0 0.0 2.205583184294257 0.0 68-69 0.0 0.0 0.0 2.467657788718693 0.0 70-71 0.0 0.0 0.0 2.758076649504 0.0 72-73 0.0 0.0 0.0 3.065033725274393 0.0 74-75 0.0 0.0 0.0 3.3806257982493886 0.0 76-77 0.0 0.0 0.0 3.7120243067853513 0.0 78-79 0.0 0.0 0.0 4.096891498576933 0.0 80-81 0.0 0.0 0.0 4.528446217627298 0.0 82-83 0.0 0.0 0.0 4.978246636985693 0.0 84-85 0.0 0.0 0.0 5.431559597579859 0.0 86-87 0.0 0.0 0.0 5.910240911543479 0.0 88-89 0.0 0.0 0.0 6.456148361936151 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 1000 0.0 48.02323 1 GTATCAA 2020 0.0 43.781593 1 ATCAACG 2270 0.0 38.279087 3 TCAACGC 2335 0.0 37.416855 4 TATCAAC 2580 0.0 33.863705 2 CCGTGCG 120 1.5019577E-7 31.675291 9 CAACGCA 2775 0.0 31.312984 5 AATGCGG 235 0.0 30.308172 7 CGTTATA 95 3.4991157E-5 29.989141 2 AACGCAG 2910 0.0 29.860321 6 ATGCGGG 225 0.0 29.547737 8 CGCAGAG 2960 0.0 29.358786 8 AGCGTAC 65 0.0058513395 29.223038 8 ACGCAGA 3015 0.0 28.820406 7 CGTACGA 35 0.008380936 27.150913 10-11 GTACATG 5005 0.0 25.840137 1 GCAGAGT 3475 0.0 24.884474 9 TACATGG 5060 0.0 24.492119 2 ACATGGG 4940 0.0 24.318115 3 AAATGCG 305 0.0 23.352196 6 >>END_MODULE