##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3224481_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1059117 Sequences flagged as poor quality 0 Sequence length 101 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.18775546044488 34.0 33.0 34.0 31.0 34.0 2 33.32316448513242 34.0 34.0 34.0 31.0 34.0 3 33.437099017389016 34.0 34.0 34.0 31.0 34.0 4 36.637520689404475 37.0 37.0 37.0 35.0 37.0 5 36.67064734113417 37.0 37.0 37.0 35.0 37.0 6 36.70854494829183 37.0 37.0 37.0 36.0 37.0 7 36.69153360771284 37.0 37.0 37.0 36.0 37.0 8 36.67588661120537 37.0 37.0 37.0 36.0 37.0 9 38.522042418354154 39.0 39.0 39.0 37.0 39.0 10-11 38.553877428083965 39.0 39.0 39.0 37.5 39.0 12-13 38.55041180530574 39.0 39.0 39.0 37.5 39.0 14-15 40.17499483059945 41.0 40.0 41.0 38.0 41.0 16-17 40.18619000544793 41.0 40.0 41.0 38.0 41.0 18-19 40.178753622121064 41.0 40.0 41.0 38.5 41.0 20-21 40.1809530958336 41.0 40.0 41.0 39.0 41.0 22-23 40.11403131098831 41.0 40.0 41.0 38.0 41.0 24-25 40.08132529267304 41.0 40.0 41.0 38.0 41.0 26-27 40.02399829291759 41.0 40.0 41.0 38.0 41.0 28-29 39.996746818340185 41.0 40.0 41.0 38.0 41.0 30-31 39.94276458597115 41.0 40.0 41.0 38.0 41.0 32-33 39.90568275270815 41.0 40.0 41.0 38.0 41.0 34-35 39.83348393048171 41.0 40.0 41.0 38.0 41.0 36-37 39.73693935608625 41.0 40.0 41.0 37.0 41.0 38-39 39.646109919867214 41.0 40.0 41.0 37.0 41.0 40-41 39.526119399462004 41.0 40.0 41.0 37.0 41.0 42-43 39.43567188516472 41.0 40.0 41.0 36.0 41.0 44-45 39.23142863347486 41.0 39.0 41.0 35.0 41.0 46-47 39.042553844381686 41.0 39.0 41.0 35.0 41.0 48-49 38.96658395625791 41.0 39.0 41.0 35.0 41.0 50-51 38.832527945448895 40.5 38.5 41.0 35.0 41.0 52-53 38.62167871915945 40.0 38.0 41.0 35.0 41.0 54-55 38.456378757021184 40.0 37.0 41.0 35.0 41.0 56-57 38.2601945771808 40.0 37.0 41.0 35.0 41.0 58-59 38.02392134202359 40.0 36.0 41.0 34.5 41.0 60-61 37.8099586731211 40.0 35.5 41.0 34.0 41.0 62-63 37.62085869644241 39.0 35.0 41.0 34.0 41.0 64-65 37.37697818088087 39.0 35.0 41.0 34.0 41.0 66-67 37.122195187122855 39.0 35.0 41.0 33.5 41.0 68-69 36.87330814253761 37.5 35.0 41.0 33.0 41.0 70-71 36.59621977552999 37.0 35.0 40.0 33.0 41.0 72-73 36.29140123329151 37.0 35.0 39.5 33.0 41.0 74-75 35.9713360280309 36.0 35.0 39.0 33.0 41.0 76-77 34.07697827529914 34.5 33.0 37.0 29.5 39.0 78-79 35.334333694955326 35.0 35.0 37.5 32.5 39.0 80-81 35.2043815744625 35.0 35.0 37.0 33.0 39.0 82-83 34.93976774992753 35.0 35.0 37.0 33.0 39.0 84-85 34.681616384214394 35.0 35.0 36.0 33.0 37.5 86-87 34.43897274805333 35.0 35.0 36.0 33.0 37.0 88-89 34.25224267007328 35.0 35.0 36.0 32.5 37.0 90-91 34.088546402333264 35.0 35.0 35.0 32.0 36.0 92-93 33.97125860504552 35.0 35.0 35.0 32.0 36.0 94-95 33.85547016996234 35.0 35.0 35.0 32.0 36.0 96-97 33.794093570398736 35.0 34.5 35.0 32.0 36.0 98-99 33.74694863740267 35.0 34.0 35.0 32.0 35.5 100-101 32.96731428161384 34.5 33.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 6.0 14 16.0 15 62.0 16 145.0 17 325.0 18 562.0 19 928.0 20 1246.0 21 1608.0 22 2019.0 23 2026.0 24 1954.0 25 2433.0 26 3372.0 27 4384.0 28 5876.0 29 6799.0 30 7331.0 31 8141.0 32 9589.0 33 13105.0 34 21571.0 35 42597.0 36 115588.0 37 250872.0 38 379893.0 39 176634.0 40 34.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.19089871793291 21.364054128138417 14.48118348156572 22.96386367236295 2 14.778442797160277 21.58637808665143 40.30432898348341 23.330850132704885 3 17.932390850113823 28.51271389279938 30.35887442086191 23.196020836224893 4 12.374081428208592 18.722955065398818 41.34302442506352 27.55993908132907 5 12.94805012099702 38.73084843317594 35.852601742772514 12.468499703054526 6 27.028175357396776 39.45343149057186 20.63586931377742 12.882523838253942 7 24.788573878051245 32.727168008822446 24.831723029655837 17.652535083470475 8 24.39721012881485 35.307052950712716 22.1801746171575 18.11556230331493 9 25.699521393764808 16.68370916527636 22.116442281636495 35.50032715932234 10-11 24.426527003154515 26.300163249197205 29.447549232048964 19.825760515599317 12-13 25.19957662845559 24.105363241266073 29.167032537481695 21.528027592796644 14-15 22.488167029704933 26.091073979550888 26.47913308916767 24.941625901576504 16-17 22.179560898371 28.55378584235736 27.28400167309183 21.98265158617981 18-19 22.07829729859874 28.041236237356216 28.22417164487021 21.65629481917484 20-21 23.289264719489832 26.798592397739224 27.793063206138008 22.119079676632932 22-23 23.331553531207675 27.220633618998658 27.21189984198945 22.23591300780422 24-25 22.863061548114015 27.062607489558495 27.386179681233706 22.68815128109378 26-27 22.66960314987395 27.887384452690515 27.450547167851646 21.99246522958389 28-29 22.482078582300662 27.719797029085953 27.773806781056553 22.024317607556835 30-31 22.667218072515535 27.013315884737292 27.83046347361136 22.489002569135813 32-33 22.552167350964083 27.309013983838398 27.924952472133587 22.21386619306393 34-35 23.14591305127836 27.20262304988563 27.313002650904444 22.338461247931562 36-37 22.463455776095312 27.156242579149055 27.788670216557836 22.591631428197793 38-39 22.3838820451376 27.364351624985716 27.39810615824314 22.853660171633543 40-41 22.78445157617147 27.170274861039907 27.695948606244635 22.349324956543988 42-43 22.650330416752823 27.306992523016817 27.78404085667589 22.25863620355447 44-45 22.850113569997692 26.890193321583684 27.58181123726852 22.677881871150106 46-47 22.860204263859245 26.78338752212197 27.163701165129822 23.192707048888963 48-49 22.490744578697754 26.821790769410892 27.578322911050705 23.10914174084065 50-51 22.788181098027884 26.93134941654227 27.288203286322478 22.99226619910737 52-53 23.009708096185875 27.09712628267347 27.015973698820527 22.877191922320122 54-55 23.02045005414888 26.67958308666559 27.19501244904954 23.104954410135992 56-57 22.999838531028953 26.880004003675072 27.055400853802595 23.06475661149338 58-59 23.268353850477133 26.79821568150529 27.203253146053886 22.730177321963694 60-61 22.882434889376874 27.25442138320229 27.077660503884204 22.785483223536634 62-63 22.69229933992184 26.90477067217314 27.46939195575182 22.9335380321532 64-65 23.02328260239426 26.96793649804507 26.96647301478496 23.042307884775713 66-67 22.766889777050128 26.95537886749056 26.981815984447422 23.29591537101189 68-69 22.943829624111405 26.948297496877117 27.414912611165715 22.692960267845763 70-71 23.272263593162982 26.724667812904524 27.250672022071214 22.752396571861276 72-73 22.929147582372863 26.656261772778645 27.438706016426888 22.9758846284216 74-75 23.01629565005566 26.42720303800241 27.279469595899226 23.277031716042703 76-77 22.783771522126763 26.317953647083147 27.187596041406326 23.710678789383763 78-79 22.799740893257276 26.25434008515396 27.245725541371623 23.700193480217145 80-81 22.460681520314548 26.828535924852982 27.32837351422604 23.382409040606433 82-83 22.50172433246735 26.922341541989915 27.41761798045615 23.158316145086584 84-85 22.66900451943954 26.455174080804163 27.505602679277473 23.370218720478825 86-87 22.455356679195972 26.987622708350443 27.288203286322478 23.268817326131106 88-89 22.816695417031358 26.413842852111713 26.939941479553255 23.82952025130368 90-91 22.660527590436182 26.685200974018926 26.96987207267941 23.684399362865484 92-93 22.784640412721163 26.61877771766481 27.210072163887467 23.386509705726564 94-95 22.69801164555002 26.44495367367345 27.098375344744724 23.758659336031805 96-97 22.62096633327574 26.948627960839076 27.190197117032394 23.24020858885279 98-99 21.78659203846223 27.032471388902263 27.51853666780913 23.66239990482638 100-101 22.464676317483953 26.691755075277037 27.089292657105297 23.754275950133717 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.5 2 3.0 3 3.0 4 1.5 5 2.5 6 3.0 7 9.5 8 16.0 9 15.0 10 18.0 11 25.0 12 24.5 13 28.0 14 38.5 15 44.0 16 53.5 17 67.0 18 76.0 19 98.5 20 124.5 21 141.0 22 173.0 23 223.0 24 300.5 25 419.0 26 559.0 27 828.0 28 1259.5 29 2170.0 30 4053.5 31 7413.5 32 13205.5 33 21334.0 34 30345.5 35 38335.0 36 45667.0 37 50281.5 38 50286.0 39 47325.5 40 42691.5 41 37931.0 42 33969.0 43 31612.5 44 30560.5 45 31104.5 46 32241.5 47 33097.0 48 34208.0 49 37129.5 50 40690.0 51 39463.0 52 36269.5 53 36271.0 54 37605.5 55 36697.5 56 31442.0 57 26102.5 58 24129.5 59 23166.0 60 19152.5 61 13882.5 62 10736.5 63 7620.5 64 4635.0 65 2914.0 66 2343.5 67 2034.5 68 1475.0 69 942.0 70 598.0 71 403.0 72 302.5 73 224.0 74 164.0 75 123.0 76 92.5 77 55.0 78 32.0 79 14.5 80 8.0 81 5.0 82 2.5 83 1.0 84 0.0 85 0.5 86 1.0 87 0.5 88 0.0 89 0.0 90 0.0 91 0.5 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.45358539235986206 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0010386010233052628 22-23 9.913918858822962E-4 24-25 2.3604568711483245E-4 26-27 0.00254929342084019 28-29 0.004626495467450717 30-31 5.665096490755978E-4 32-33 1.4162741226889946E-4 34-35 0.004201613230644018 36-37 0.002218829458879425 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0074118345754057395 46-47 0.07364625437982772 48-49 7.553461987674638E-4 50-51 0.0 52-53 9.441827484593298E-5 54-55 0.0 56-57 0.008497644736133968 58-59 0.04244101454324688 60-61 0.03229104999730908 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 3.304639619607654E-4 78-79 0.0088753178355177 80-81 0.0068925340637531075 82-83 0.0010858101607282293 84-85 0.002407666008571291 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.06859487667557031 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 1059117.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 49.7602721559468 #Duplication Level Percentage of deduplicated Percentage of total 1 72.36238963093093 36.00772201889786 2 15.154540017035725 15.08188071291769 3 5.384927526284202 8.038663777438536 4 2.4661779880924652 4.908707514899456 5 1.3205740343466765 3.2856061675583637 6 0.8148204061296661 2.4327411100338776 7 0.5296247265959845 1.8447989375154572 8 0.35596877276416244 1.4170482409410485 9 0.23953427967020963 1.0727361852361474 >10 1.1789500642267698 10.242646230974788 >50 0.09559131336796298 3.335377531024078 >100 0.08892113882947203 9.091706031770556 >500 0.006080077505395622 2.149213359591669 >1k 0.0019000242204361317 1.091152181200398 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTACATGGGGGGAATTCGTGGAGAAAGAAATGGCTCGTCTGGCAGCATTT 1460 0.13785068127506214 No Hit TCATTTAGGTGAGAAAACCCTCTCTACTTTGGCGCGACTGCGTGAACGCG 1256 0.11858935320649183 No Hit GTATCAACGCAGAGTACATGGGGGGAATTCGTGGAGAAAGAAATGGCTCG 1226 0.11575680496111385 No Hit CTTTATTGGTGCCCGACCATCATTTAGGTGAGAAAACCCTCTCTACTTTG 1211 0.11434053083842484 No Hit GTCTAATGTTATTAAATATGTTAAATAAACTTGATGGCGGTGCCAGCGTC 1115 0.10527637645321528 No Hit GAGTACATGGGGGGAATTCGTGGAGAAAGAAATGGCTCGTCTGGCAGCAT 1113 0.1050875399035234 No Hit GTATCAGCAATGGGATACCCGAGCCAGCATGCATATCTTCAATGACGACG 1071 0.10112197235999422 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 9.441827484593298E-5 7 0.0 0.0 0.0 0.0 9.441827484593298E-5 8 0.0 0.0 0.0 0.0 9.441827484593298E-5 9 0.0 0.0 0.0 0.0 9.441827484593298E-5 10-11 0.0 0.0 0.0 0.0 9.441827484593298E-5 12-13 0.0 0.0 0.0 9.441827484593298E-5 9.441827484593298E-5 14-15 0.0 0.0 0.0 9.441827484593298E-5 9.441827484593298E-5 16-17 0.0 0.0 0.0 1.8883654969186595E-4 1.8883654969186595E-4 18-19 0.0 0.0 0.0 2.832548245377989E-4 1.8883654969186595E-4 20-21 0.0 0.0 0.0 5.193005116526314E-4 2.3604568711483242E-4 22-23 0.0 0.0 0.0 6.137187864985643E-4 2.832548245377989E-4 24-25 0.0 0.0 0.0 7.553461987674638E-4 2.832548245377989E-4 26-27 0.0 0.0 0.0 0.0012274375729971285 4.248822368066984E-4 28-29 0.0 0.0 0.0 0.0018411563594956932 4.720913742296649E-4 30-31 0.0 0.0 0.0 0.005145795979103347 4.720913742296649E-4 32-33 0.0 0.0 0.0 0.012085539180279423 4.720913742296649E-4 34-35 0.0 0.0 0.0 0.022235503726217215 7.553461987674638E-4 36-37 0.0 0.0 0.0 0.039608466297868884 7.553461987674638E-4 38-39 0.0 0.0 0.0 0.07477927367797892 7.553461987674638E-4 40-41 0.0 0.0 0.0 0.11377402118934923 7.553461987674638E-4 42-43 0.0 0.0 0.0 0.1533824874872181 7.553461987674638E-4 44-45 0.0 0.0 0.0 0.19605954771757983 7.553461987674638E-4 46-47 0.0 0.0 0.0 0.2505861014411061 7.553461987674638E-4 48-49 0.0 0.0 0.0 0.30917264098300756 7.553461987674638E-4 50-51 0.0 0.0 0.0 0.374746132863508 7.553461987674638E-4 52-53 0.0 0.0 0.0 0.4441907740126917 7.553461987674638E-4 54-55 0.0 0.0 0.0 0.5189700476906707 8.025553361904302E-4 56-57 0.0 0.0 0.0 0.6084313631071921 8.497644736133968E-4 58-59 0.0 9.441827484593298E-5 0.0 0.7077121791076906 8.497644736133968E-4 60-61 0.0 9.441827484593298E-5 0.0 0.821344572884771 9.441827484593298E-4 62-63 0.0 9.441827484593298E-5 0.0 0.9488092439267806 0.0011330192981511957 64-65 0.0 9.441827484593298E-5 0.0 1.072166720012992 0.0011330192981511957 66-67 0.0 9.441827484593298E-5 0.0 1.208789963715057 0.0011330192981511957 68-69 0.0 9.441827484593298E-5 0.0 1.3718503243739832 0.0011330192981511957 70-71 0.0 9.441827484593298E-5 0.0 1.5468073876634971 0.0011802284355741622 72-73 0.0 9.441827484593298E-5 0.0 1.7342748723700971 0.0012274375729971288 74-75 0.0 9.441827484593298E-5 0.0 1.9262744342693017 0.0013218558478430616 76-77 0.0 9.441827484593298E-5 0.0 2.1310204632727077 0.0013218558478430616 78-79 0.0 9.441827484593298E-5 0.0 2.3671605686623858 0.0013218558478430616 80-81 0.0 9.441827484593298E-5 0.0 2.639085200218673 0.0013690649852660282 82-83 0.0 9.441827484593298E-5 0.0 2.9296574410570315 0.0015106923975349276 84-85 0.0 9.441827484593298E-5 0.0 3.215225513328556 0.0015106923975349276 86-87 0.0 9.441827484593298E-5 0.0 3.5245869908612555 0.0016051106723808605 88-89 0.0 9.441827484593298E-5 0.0 3.8690248574992188 0.0016995289472267936 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 1540 0.0 47.401367 1 GGTATCA 745 0.0 46.11013 1 CCGTGCG 180 0.0 42.20972 9 ATCAACG 2035 0.0 35.468605 3 AACCGTG 215 0.0 35.338367 7 AAACCGT 215 0.0 35.338367 6 ACCGTGC 230 0.0 35.098297 8 TAGACGC 55 0.0025832846 34.53522 5 TCAACGC 2170 0.0 33.262035 4 TATCAAC 2435 0.0 30.227186 2 ACGCAGA 2560 0.0 28.380264 7 CGCAGAG 2585 0.0 27.922096 8 TATCGCG 35 0.008403339 27.1361 16-17 CTAACGC 35 0.008405275 27.134819 88-89 CAACGCA 2675 0.0 26.98266 5 AACGCAG 2805 0.0 25.732128 6 GTACATG 4060 0.0 25.500801 1 TGCGCGG 150 0.0 25.325829 12-13 TACATGG 4180 0.0 24.083773 2 GCAGAGT 3030 0.0 23.664608 9 >>END_MODULE