##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3224480_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1118808 Sequences flagged as poor quality 0 Sequence length 101 %GC 40 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.201260627382 34.0 33.0 34.0 31.0 34.0 2 33.33853619209015 34.0 34.0 34.0 31.0 34.0 3 33.45395277831406 34.0 34.0 34.0 31.0 34.0 4 36.650966028129936 37.0 37.0 37.0 35.0 37.0 5 36.69036599666788 37.0 37.0 37.0 35.0 37.0 6 36.72861652759008 37.0 37.0 37.0 37.0 37.0 7 36.7057725722376 37.0 37.0 37.0 36.0 37.0 8 36.69316272318396 37.0 37.0 37.0 36.0 37.0 9 38.548099405796165 39.0 39.0 39.0 38.0 39.0 10-11 38.57866586581433 39.0 39.0 39.0 37.5 39.0 12-13 38.59087260727489 39.0 39.0 39.0 38.0 39.0 14-15 40.22925381298668 41.0 40.0 41.0 39.0 41.0 16-17 40.244019081021946 41.0 40.0 41.0 39.0 41.0 18-19 40.254851145147335 41.0 40.0 41.0 39.0 41.0 20-21 40.26968344881338 41.0 40.0 41.0 39.0 41.0 22-23 40.20375971569742 41.0 40.0 41.0 39.0 41.0 24-25 40.19021002710027 41.0 40.0 41.0 39.0 41.0 26-27 40.15262404273119 41.0 40.0 41.0 39.0 41.0 28-29 40.122646155551266 41.0 40.0 41.0 38.0 41.0 30-31 40.064955738607516 41.0 40.0 41.0 38.0 41.0 32-33 40.02217672737413 41.0 40.0 41.0 38.0 41.0 34-35 39.96046551329629 41.0 40.0 41.0 38.0 41.0 36-37 39.89142104811549 41.0 40.0 41.0 38.0 41.0 38-39 39.831879107049645 41.0 40.0 41.0 38.0 41.0 40-41 39.74840365817906 41.0 40.0 41.0 38.0 41.0 42-43 39.697017271953726 41.0 40.0 41.0 37.5 41.0 44-45 39.53821746001101 41.0 40.0 41.0 37.0 41.0 46-47 39.385581797770485 41.0 40.0 41.0 36.5 41.0 48-49 39.355291077646925 41.0 40.0 41.0 36.0 41.0 50-51 39.29751083295794 41.0 39.5 41.0 36.0 41.0 52-53 39.17750454054672 41.0 39.0 41.0 35.5 41.0 54-55 39.08375878613667 41.0 39.0 41.0 35.0 41.0 56-57 38.97286844570293 41.0 39.0 41.0 35.0 41.0 58-59 38.81969917984141 41.0 38.5 41.0 35.0 41.0 60-61 38.67075584014415 40.0 38.0 41.0 35.0 41.0 62-63 38.52924988022967 40.0 38.0 41.0 35.0 41.0 64-65 38.34287071597629 40.0 37.0 41.0 35.0 41.0 66-67 38.125102787967194 40.0 37.0 41.0 34.5 41.0 68-69 37.91762259476157 39.5 36.0 41.0 34.0 41.0 70-71 37.657074761710675 39.0 36.0 41.0 34.0 41.0 72-73 37.37524177517501 39.0 35.0 41.0 34.0 41.0 74-75 37.04477265089274 38.5 35.0 40.0 34.0 41.0 76-77 35.0349523778879 35.5 33.5 38.5 30.5 39.5 78-79 36.272815800387555 37.0 35.0 39.0 33.5 40.5 80-81 36.075255986728735 36.5 35.0 39.0 34.0 40.0 82-83 35.72057672093871 36.0 35.0 38.0 34.0 39.0 84-85 35.35967163266619 36.0 35.0 37.0 33.5 39.0 86-87 35.02150547725794 35.0 35.0 37.0 33.0 38.0 88-89 34.73588497758328 35.0 35.0 36.5 33.0 37.0 90-91 34.50125982295443 35.0 35.0 36.0 33.0 37.0 92-93 34.32554379303687 35.0 35.0 36.0 33.0 36.5 94-95 34.159135437000806 35.0 35.0 35.5 33.0 36.0 96-97 34.055650299247056 35.0 35.0 35.0 33.0 36.0 98-99 33.96234921452117 35.0 35.0 35.0 32.5 36.0 100-101 33.24235749118705 35.0 34.0 35.0 30.5 35.5 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 0.0 9 1.0 10 0.0 11 0.0 12 1.0 13 1.0 14 10.0 15 47.0 16 117.0 17 266.0 18 540.0 19 870.0 20 1363.0 21 1851.0 22 2663.0 23 2580.0 24 2181.0 25 2129.0 26 2468.0 27 3082.0 28 3919.0 29 4821.0 30 5767.0 31 6786.0 32 8764.0 33 11662.0 34 18085.0 35 32857.0 36 74089.0 37 176033.0 38 443459.0 39 312273.0 40 122.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.958882457802545 24.150191061638147 15.696959627845155 21.19396685271415 2 12.801928481026234 22.955323880415584 44.12383536764127 20.118912270916905 3 16.04341406210896 30.32379103474412 32.449088672944775 21.183706230202144 4 10.668139662926972 19.887952177674812 44.66584078769548 24.778067371702743 5 11.031562162587324 40.246852006778646 37.8501047543457 10.871481076288335 6 24.22471058483672 42.980654410765744 21.444877047715067 11.349757956682469 7 22.178246848431545 34.313483636155624 27.620020593345775 15.888248922067058 8 21.340748367905842 39.48872371309465 23.504837291116974 15.665690627882531 9 23.570085305074688 18.103016782146714 24.350737570700247 33.97616034207835 10-11 21.5497207742526 28.891507747531303 31.9709458638122 17.5878256144039 12-13 22.28250959950233 26.566622691292874 32.056349257423975 19.09451845178082 14-15 19.935994379732715 28.64070510757878 28.903306018548314 22.519994494140192 16-17 19.290620017018114 31.858728217889038 29.485085912864406 19.365565852228443 18-19 19.4570471430308 30.817441419796783 30.79992277495334 18.925588662219077 20-21 20.478084302043666 29.698198558542938 30.698155208466943 19.125561930946457 22-23 20.305714618982947 29.751914682712595 30.238557153563878 19.703813544740584 24-25 20.0786106604815 29.8581075343782 30.025384226920686 20.037897578219617 26-27 20.003512759674948 29.97242081430775 30.16817001756827 19.855896408449038 28-29 19.822920889140754 29.94689235590479 30.461656173702174 19.768530581252282 30-31 20.23185659571235 29.684616037790658 30.097202794077553 19.986324572419434 32-33 20.073497996971774 29.68816756434985 30.39995316435557 19.838381274322806 34-35 20.196466200528707 29.794036741324714 30.094903543408257 19.914593514738314 36-37 20.287669726837105 29.32677740008563 30.27235844663353 20.113194426443734 38-39 20.004862317752465 29.80028744878478 30.2036631843891 19.99118704907366 40-41 20.116320226526803 29.424977297266373 30.572135701568097 19.886566774638723 42-43 20.178752743991822 29.627067378853205 30.176312647031484 20.017867230123485 44-45 20.43741725909379 29.625780926662394 29.832895773051472 20.103906041192346 46-47 20.416157524774263 29.2912387042063 29.871302645868035 20.421301125151402 48-49 20.08899781594694 29.373346150734967 30.007870099120343 20.529785934197747 50-51 20.084232504594173 29.534736970060994 29.747508062151862 20.633522463192968 52-53 20.2936071247256 29.541753366082474 29.636318295900637 20.52832121329129 54-55 20.390004361785042 29.571517186148117 29.664786093771227 20.373692358295614 56-57 20.605418905474416 29.503679674769135 29.412458780759675 20.478442638996775 58-59 20.407708887431415 29.233801111705727 29.673279406708776 20.68521059415409 60-61 20.5897039410305 29.544563520109723 29.542373040470675 20.323359498389102 62-63 20.321583327970483 29.498939943225288 29.675914008480454 20.503562720323774 64-65 20.451721832521756 29.468863290216014 29.43735654375013 20.642058333512097 66-67 20.38701010361027 29.490806286690834 29.421893658250564 20.70028995144833 68-69 20.56854259175837 29.28666044576013 29.58045527025191 20.564341692229586 70-71 20.657431838170627 29.103563792893866 29.773070982688722 20.46593338624679 72-73 20.421779250774037 29.446518079956522 29.44414948766902 20.687553181600418 74-75 20.309204081486726 29.14682411995624 29.674975509649553 20.86899628890748 76-77 20.24313463305458 29.218790780154524 29.75932334886182 20.778751237929075 78-79 20.37927358783607 29.383780981346945 29.201339927193416 21.035605503623568 80-81 20.348776925428474 29.13045771217211 29.565635564359127 20.955129798040293 82-83 20.151752080468466 29.591521618951045 29.557780064953608 20.69894623562688 84-85 20.388228022512113 29.174575238731986 29.71744554649257 20.719751192263328 86-87 19.69363822925828 29.583315457165128 29.80989588919636 20.913150424380234 88-89 20.30048944948552 29.07652608847988 29.461578751671425 21.16140571036317 90-91 20.163870833959 29.31070389199934 29.553015352053258 20.9724099219884 92-93 20.503661264337254 29.154568592005326 29.439872364101955 20.901897779555465 94-95 20.301249186634347 28.94701324981587 29.38042094800895 21.371316615540824 96-97 20.251329986914644 29.19191675425989 29.58438802725758 20.97236523156788 98-99 19.827217896189516 29.43007200520554 29.50300677149252 21.239703327112426 100-101 20.12054852350866 29.266691471625748 29.306626859477518 21.306133145388067 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1.0 1 1.0 2 1.0 3 1.0 4 2.0 5 2.5 6 5.0 7 9.5 8 24.0 9 44.0 10 49.0 11 44.0 12 51.5 13 67.5 14 80.5 15 100.5 16 125.0 17 145.5 18 160.0 19 181.5 20 217.0 21 277.5 22 353.0 23 448.0 24 561.5 25 782.5 26 1275.0 27 2093.0 28 4001.5 29 8300.5 30 16338.5 31 28448.5 32 43265.5 33 58121.5 34 69990.5 35 77901.5 36 82723.0 37 82662.0 38 76599.5 39 67496.5 40 55790.5 41 43292.5 42 34241.5 43 28142.0 44 23812.5 45 21467.5 46 20445.0 47 20159.5 48 20366.5 49 21293.5 50 22036.0 51 20745.0 52 18860.0 53 18974.5 54 19251.5 55 18319.0 56 15964.5 57 13424.5 58 12240.0 59 11485.5 60 9597.5 61 7066.0 62 5473.5 63 3911.5 64 2489.0 65 1708.0 66 1340.5 67 1110.5 68 846.5 69 562.5 70 342.0 71 246.5 72 213.0 73 171.5 74 138.5 75 112.0 76 78.5 77 47.0 78 33.0 79 23.0 80 11.0 81 5.5 82 4.5 83 5.0 84 2.5 85 2.5 86 2.0 87 0.5 88 0.5 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.47309279161393203 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 8.491179898606375E-4 22-23 0.0017429264002402555 24-25 2.681425231138855E-4 26-27 0.002636734810619874 28-29 0.003798685744113378 30-31 0.0011619509334935038 32-33 1.7876168207592365E-4 34-35 0.0036199240620374542 36-37 0.002234521025949046 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.009384988308985992 46-47 0.08169408870869711 48-49 0.0014747838771263701 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.008491179898606375 58-59 0.03901473711307034 60-61 0.029629748804084345 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 3.575233641518473E-4 78-79 0.008088966113935545 80-81 0.006256658872657328 82-83 8.491179898606375E-4 84-85 0.0029048773337337595 86-87 0.0 88-89 0.0 90-91 0.0 92-93 4.469042051898091E-5 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.06721439246054729 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 1118808.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.281362077571735 #Duplication Level Percentage of deduplicated Percentage of total 1 69.47654651522738 29.375630191095837 2 13.560652556985781 11.467257215401295 3 5.453654803716814 6.917638602061171 4 3.0492483554518923 5.157054951252065 5 1.9046798532595741 4.026622925876213 6 1.3151007466800875 3.336255050331944 7 0.910991207253988 2.6962564358373045 8 0.694245566777377 2.3482918543730626 9 0.5274201663336693 2.007003871779028 >10 2.87031721239036 21.123211693581627 >50 0.15273392098238228 4.485646199085134 >100 0.08101576480254313 6.028624549579971 >500 0.0031812470045660523 0.8768989444701366 >1k 2.1208313363773682E-4 0.15360751527531893 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source ACTTAATACTTCAGTACTTCTAGCATCAGGTGTTTCAATTACATGAGCTC 1713 0.1531093806980286 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10-11 0.0 0.0 0.0 0.0 0.0 12-13 0.0 0.0 0.0 8.938084103796184E-5 0.0 14-15 0.0 0.0 0.0 1.7876168207592367E-4 0.0 16-17 0.0 0.0 0.0 1.7876168207592367E-4 0.0 18-19 0.0 0.0 0.0 2.234521025949046E-4 0.0 20-21 0.0 0.0 0.0 4.9159462570879E-4 0.0 22-23 0.0 0.0 0.0 7.150467283036947E-4 0.0 24-25 0.0 0.0 0.0 8.044275693416565E-4 0.0 26-27 0.0 0.0 0.0 9.384988308985991E-4 0.0 28-29 0.0 0.0 0.0 0.0012513317745314655 0.0 30-31 0.0 0.0 0.0 0.0028154964926957976 0.0 32-33 0.0 0.0 0.0 0.006882324759923061 0.0 34-35 0.0 0.0 0.0 0.013049602791542428 8.938084103796184E-5 36-37 0.0 0.0 0.0 0.022747424044161288 8.938084103796184E-5 38-39 0.0 0.0 0.0 0.040757663513310595 8.938084103796184E-5 40-41 0.0 0.0 0.0 0.06515863311667416 8.938084103796184E-5 42-43 0.0 0.0 0.0 0.09174943332546782 8.938084103796184E-5 44-45 0.0 0.0 0.0 0.12142387255007114 8.938084103796184E-5 46-47 0.0 0.0 0.0 0.1576231131704457 8.938084103796184E-5 48-49 0.0 0.0 0.0 0.20057060728918635 8.938084103796184E-5 50-51 0.0 0.0 0.0 0.25183051962445746 8.938084103796184E-5 52-53 0.0 0.0 0.0 0.3045652158368549 8.938084103796184E-5 54-55 0.0 0.0 0.0 0.3602494798035052 8.938084103796184E-5 56-57 0.0 0.0 0.0 0.4297877741310394 8.938084103796184E-5 58-59 0.0 0.0 0.0 0.5094261034958635 8.938084103796184E-5 60-61 0.0 0.0 0.0 0.6014436793444451 8.938084103796184E-5 62-63 0.0 0.0 0.0 0.6990475577578994 8.938084103796184E-5 64-65 0.0 0.0 0.0 0.7994669326640496 8.938084103796184E-5 66-67 0.0 0.0 0.0 0.911058912699945 8.938084103796184E-5 68-69 0.0 0.0 0.0 1.0448620317337738 8.938084103796184E-5 70-71 0.0 0.0 0.0 1.1975245082266126 8.938084103796184E-5 72-73 0.0 0.0 0.0 1.3706551973171446 8.938084103796184E-5 74-75 0.0 0.0 0.0 1.5496850219161824 8.938084103796184E-5 76-77 0.0 0.0 0.0 1.7274635147406883 1.3407126155694276E-4 78-79 0.0 0.0 0.0 1.9326819257638488 1.7876168207592367E-4 80-81 0.0 0.0 0.0 2.1720885084840296 1.7876168207592367E-4 82-83 0.0 0.0 0.0 2.4438509556599524 1.7876168207592367E-4 84-85 0.0 0.0 0.0 2.7158815453589895 1.7876168207592367E-4 86-87 0.0 0.0 0.0 3.0106148686816683 2.234521025949046E-4 88-89 0.0 0.0 0.0 3.3377040564600895 2.681425231138855E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 1700 0.0 41.272823 1 CCGTGCG 140 0.0 40.705223 9 GGTATCA 965 0.0 38.58007 1 TCAACGC 1880 0.0 36.37488 4 ATCAACG 1895 0.0 36.086956 3 CAACGCA 2035 0.0 33.370953 5 AACGCAG 2065 0.0 32.886147 6 CGCAGAG 2255 0.0 30.325846 8 ACGCAGA 2280 0.0 29.993324 7 TATCAAC 2405 0.0 29.026804 2 AACCGTG 225 1.0186341E-10 25.327696 7 TAGACCG 95 0.0012281266 24.994436 5 GCAGAGT 2800 0.0 24.083927 9 AGTTGCG 100 0.0016557615 23.744717 2 ACCGTGC 240 2.3101165E-10 23.744717 8 TAATACT 1240 0.0 23.744715 4 AAACCGT 245 2.9831426E-10 23.26013 6 CAGTACG 105 0.0021990272 22.614016 9 AGAGTAC 2600 0.0 20.913614 10-11 TGCGCGG 165 2.7284841E-11 20.147032 12-13 >>END_MODULE