##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3224479_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1033856 Sequences flagged as poor quality 0 Sequence length 101 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.195563018447444 34.0 33.0 34.0 31.0 34.0 2 33.32941241333416 34.0 34.0 34.0 31.0 34.0 3 33.45234442707689 34.0 34.0 34.0 31.0 34.0 4 36.65462211371796 37.0 37.0 37.0 35.0 37.0 5 36.694128582703975 37.0 37.0 37.0 35.0 37.0 6 36.735907128265445 37.0 37.0 37.0 37.0 37.0 7 36.71310704779002 37.0 37.0 37.0 36.0 37.0 8 36.70766528414015 37.0 37.0 37.0 36.0 37.0 9 38.565821545747184 39.0 39.0 39.0 38.0 39.0 10-11 38.59523908552062 39.0 39.0 39.0 38.0 39.0 12-13 38.60410879271388 39.0 39.0 39.0 38.0 39.0 14-15 40.240976983254924 41.0 40.0 41.0 39.0 41.0 16-17 40.25727374025009 41.0 40.0 41.0 39.0 41.0 18-19 40.27224294292435 41.0 40.0 41.0 39.0 41.0 20-21 40.28543143339111 41.0 40.0 41.0 39.0 41.0 22-23 40.22342956852792 41.0 40.0 41.0 39.0 41.0 24-25 40.20782246270274 41.0 40.0 41.0 39.0 41.0 26-27 40.17488750851183 41.0 40.0 41.0 39.0 41.0 28-29 40.1488553531633 41.0 40.0 41.0 38.5 41.0 30-31 40.10153976956172 41.0 40.0 41.0 38.0 41.0 32-33 40.07601010198712 41.0 40.0 41.0 38.0 41.0 34-35 40.02223859028724 41.0 40.0 41.0 38.0 41.0 36-37 39.96574619676241 41.0 40.0 41.0 38.0 41.0 38-39 39.909557036956784 41.0 40.0 41.0 38.0 41.0 40-41 39.835276866410794 41.0 40.0 41.0 38.0 41.0 42-43 39.800182520583135 41.0 40.0 41.0 38.0 41.0 44-45 39.65834313482729 41.0 40.0 41.0 37.0 41.0 46-47 39.52466881267797 41.0 40.0 41.0 37.0 41.0 48-49 39.508961112572734 41.0 40.0 41.0 37.0 41.0 50-51 39.45379869150055 41.0 39.5 41.0 36.0 41.0 52-53 39.33174639408196 41.0 39.0 41.0 36.0 41.0 54-55 39.22947102884734 41.0 39.0 41.0 35.0 41.0 56-57 39.10601282963972 41.0 39.0 41.0 35.0 41.0 58-59 38.94259790531757 40.5 38.5 41.0 35.0 41.0 60-61 38.78286144298626 40.0 38.0 41.0 35.0 41.0 62-63 38.61474276881887 40.0 37.5 41.0 35.0 41.0 64-65 38.41118202148075 40.0 37.0 41.0 35.0 41.0 66-67 38.16467477095456 40.0 36.5 41.0 35.0 41.0 68-69 37.918890058189916 39.0 36.0 41.0 34.5 41.0 70-71 37.60624787204408 39.0 36.0 41.0 34.0 41.0 72-73 37.29176984028724 38.5 35.0 40.5 34.0 41.0 74-75 36.93546731846601 37.5 35.0 40.0 34.0 41.0 76-77 34.91276831589699 35.5 33.0 38.0 30.5 39.0 78-79 36.13435478441872 36.5 35.0 39.0 33.5 40.0 80-81 35.92567340132475 36.0 35.0 38.5 34.0 39.0 82-83 35.59202925745946 36.0 35.0 37.0 34.0 39.0 84-85 35.24983556704222 35.0 35.0 37.0 34.0 39.0 86-87 34.94857359245388 35.0 35.0 36.5 33.0 37.0 88-89 34.70435631267797 35.0 35.0 36.0 33.0 37.0 90-91 34.49807274900954 35.0 35.0 36.0 33.0 37.0 92-93 34.350374230066855 35.0 35.0 36.0 33.0 36.0 94-95 34.201521295035285 35.0 35.0 35.0 33.0 36.0 96-97 34.11808752863068 35.0 35.0 35.0 33.0 36.0 98-99 34.04385620434567 35.0 35.0 35.0 33.0 36.0 100-101 33.30899370898848 34.5 34.0 35.0 31.0 35.5 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 0.0 13 1.0 14 9.0 15 33.0 16 86.0 17 153.0 18 278.0 19 431.0 20 604.0 21 837.0 22 1136.0 23 1294.0 24 1409.0 25 1785.0 26 2440.0 27 3286.0 28 4533.0 29 4857.0 30 4942.0 31 5848.0 32 7218.0 33 9823.0 34 15534.0 35 28811.0 36 70993.0 37 178670.0 38 447383.0 39 241422.0 40 39.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.10742122006479 22.769663516538415 14.109969703950151 23.012945559446642 2 13.300788504395197 22.55671969790764 42.29912096075276 21.84337083694441 3 16.46979850191903 30.701954624241672 30.878381515414137 21.949865358425157 4 10.846094620527422 19.004580908753248 43.16490884610623 26.9844156246131 5 11.280294354339482 40.53939813668441 36.71043162684165 11.469875882134456 6 25.734628420205524 41.71112804878049 20.811699114770335 11.742544416243655 7 23.944050235235856 32.94820555280426 27.052123313111302 16.055620898848584 8 23.31775411662746 37.858850749040485 22.87920174569766 15.944193388634394 9 25.454318589822954 16.7919903739012 22.227563606537082 35.526127429738764 10-11 22.301993701250463 28.19125680945896 31.211019716478887 18.295729772811686 12-13 23.463519097437167 25.963190231521605 30.58704500433329 19.986245666707937 14-15 21.22094372910734 27.488257552309026 27.656559520861705 23.634239197721925 16-17 20.400713445586234 30.604358827534977 28.56103751392844 20.433890212950352 18-19 20.299103550204283 29.67332974805002 29.57408962176551 20.45347707998019 20-21 21.370097011500256 28.968468723354967 29.184603323607515 20.47683094153726 22-23 21.260156310454228 29.16481273698058 28.530188423740615 21.044842528824574 24-25 21.02975336352148 29.603776952061207 28.3472594415338 21.019210242883517 26-27 20.765946498077057 29.786222519713068 28.90271340024298 20.545117581966895 28-29 20.722933287935184 29.155091428261898 29.38583848576536 20.73613679803756 30-31 21.239817148782315 28.964468595903064 28.968627822712474 20.827086432602147 32-33 21.169592849290833 28.760982555105624 29.32315009205832 20.746274503545227 34-35 21.032259999090748 29.159214524012423 29.121973962560176 20.68655151433665 36-37 20.95505199552348 28.895891913537795 28.840225605727777 21.308830485210947 38-39 20.764738996533367 29.18414169865049 29.076099572861207 20.975019731954934 40-41 20.787711247988113 28.79603155565185 29.845500727374024 20.57075646898601 42-43 20.908376021418842 28.88714675931658 29.182062105360902 21.022415113903676 44-45 20.83141074194132 28.824941161448344 29.007478517761843 21.336169578848498 46-47 21.369779208698066 28.44102503540463 28.77474331038849 21.414452445508818 48-49 20.708268305080402 28.53825837613067 29.1265958017905 21.62687751699843 50-51 20.646685805373284 28.91732504333292 28.976037281787793 21.459951869506007 52-53 20.695648809552598 28.7431022725624 29.20902834536758 21.35222057251742 54-55 21.02894406958029 28.749264887953448 28.98353349015724 21.238257552309026 56-57 21.341162893841936 28.947076949566853 28.39579618185591 21.315963974735304 58-59 20.709354915496313 28.472508481333325 29.194655550459338 21.62348105271103 60-61 21.122345955480213 28.806224816540816 29.08033115296401 20.99109807501496 62-63 20.57559273245017 28.94503683298254 29.327681998266687 21.151688436300606 64-65 20.995622214312245 28.865915562708928 28.811797774545006 21.326664448433824 66-67 20.916936207750403 29.14791808530395 28.484914727002604 21.450230979943047 68-69 21.061975749040485 28.69040756159465 29.073778166398416 21.17383852296645 70-71 21.04364631051133 28.564084359910858 29.00824679645908 21.38402253311873 72-73 20.7062685712517 29.072569100532377 28.67527005695184 21.545892271264083 74-75 20.81798625727374 28.64499504766621 28.53003706512319 22.00698162993686 76-77 20.58920254774606 28.701993993354968 29.02447635306692 21.684327105832054 78-79 20.861986409034845 28.07714444632536 28.707794249232183 22.353074895407605 80-81 20.317577623018888 29.06448041656248 28.44893254897371 22.16900941144492 82-83 20.637539911534468 29.08379270086831 28.38823658000346 21.89043080759376 84-85 21.026759589296166 28.31496321946926 28.58807256477097 22.070204626463603 86-87 20.024887411786555 29.103521186702984 29.23439047604309 21.637200925467376 88-89 20.584491457224217 28.397813622013125 28.724745032190167 22.292949888572487 90-91 20.81271473009781 28.545900009285624 28.46469914572242 22.176686114894146 92-93 20.93753869010771 28.57143548037638 28.523121208369446 21.967904621146463 94-95 20.608189148198587 27.90330568280302 28.371842887210597 23.116662281787793 96-97 20.84623003590442 28.218436610127522 28.74776564627956 22.187567707688498 98-99 20.270859771573605 28.00114329268293 28.94856730531138 22.77942963043209 100-101 20.480399473073412 28.268682228616836 28.69485007660955 22.556068221700198 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2.0 1 2.0 2 3.5 3 3.0 4 2.5 5 4.0 6 4.5 7 11.0 8 19.5 9 16.5 10 18.0 11 26.5 12 30.0 13 33.5 14 35.0 15 36.0 16 38.0 17 40.5 18 57.0 19 73.0 20 76.5 21 89.5 22 104.0 23 124.0 24 161.5 25 209.5 26 268.0 27 395.0 28 592.0 29 1061.0 30 2218.5 31 5163.0 32 11307.5 33 21055.5 34 34213.0 35 49378.5 36 68686.5 37 84733.5 38 86445.5 39 81358.5 40 71594.5 41 59428.0 42 50191.5 43 42070.5 44 35556.0 45 30702.5 46 26334.0 47 22569.5 48 20499.0 49 20304.0 50 21204.5 51 20428.5 52 18886.0 53 18680.5 54 19149.5 55 18830.5 56 16035.0 57 13481.0 58 12656.0 59 12002.0 60 9992.0 61 7298.0 62 5826.0 63 4100.5 64 2380.5 65 1493.0 66 1113.5 67 909.5 68 693.0 69 483.5 70 294.5 71 162.5 72 112.0 73 87.5 74 73.5 75 49.5 76 35.0 77 21.5 78 11.5 79 6.5 80 5.0 81 2.5 82 1.5 83 1.0 84 1.0 85 1.5 86 1.0 87 0.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.48449687383929674 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 9.18890058189922E-4 22-23 0.001547604308530395 24-25 6.287142503404729E-4 26-27 0.0023214064627955925 28-29 0.003869010771325987 30-31 9.672526928314968E-4 32-33 4.836263464157484E-5 34-35 0.0035788349634765385 36-37 0.0016443295778135446 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.00918890058189922 46-47 0.0772834901572366 48-49 0.0010156153274730718 50-51 0.0 52-53 9.672526928314969E-5 54-55 0.0 56-57 0.007883109446576698 58-59 0.03965736040609137 60-61 0.030516822458833727 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 9.672526928314969E-5 78-79 0.007834746811935123 80-81 0.005948604060913706 82-83 6.770768849820478E-4 84-85 0.0020312306549461435 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.06722406215178903 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 1033856.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.89187221248621 #Duplication Level Percentage of deduplicated Percentage of total 1 69.61314283125057 29.858380266275507 2 15.220064212572963 13.056340985430282 3 5.92394733520033 7.622675762847324 4 2.939431366757305 5.0431085824131205 5 1.7094944767072986 3.666170932144023 6 1.047999736074273 2.69704024550502 7 0.7118855763441017 2.1373873619324315 8 0.4945260892178474 1.6968919859577978 9 0.37125777362922185 1.4331546885957047 >10 1.6652138268536403 12.58558204924951 >50 0.15967593601290941 4.85618109118428 >100 0.13271635374791776 11.053266925819274 >500 0.007700266201606703 2.23802766315179 >1k 0.002944219430026092 2.0557914594939595 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source ACTTAATACTTCAGTACTTCTAGCATCAGGTGTTTCAATTACATGAGCTC 3852 0.3725857372786926 No Hit GCCTTATAGAAGGTAAACGAAACCACATAAATCAAGCCCTACTAATTACC 2074 0.20060820849325242 No Hit CAATAAGGAATGTTGATCCAATAATTACATGGAGTCCATGGAATCCAGTA 2038 0.19712609879905907 No Hit CCATTATACTAGGACTTTACTTCACCATCCTCCAAGCTTCAGAATACTTT 1645 0.15911306797078123 No Hit CTTATACACATCTCCGAGCCCACGAGACAAGAGGCAATCTCGTATGCCGT 1617 0.15640476043085302 No Hit ATGTAGAACCATAGATACCATCTGAAATGGAGAATGATGTTTCAAAGTAT 1572 0.1520521233131113 No Hit ATTACATGGAGTCCATGGAATCCAGTAGCCATGAAGAATGTAGAACCATA 1505 0.14557153027114028 No Hit CATCATAGCCTTATAGAAGGTAAACGAAACCACATAAATCAAGCCCTACT 1240 0.1199393339111056 No Hit TACTAGGACTTTACTTCACCATCCTCCAAGCTTCAGAATACTTTGAAACA 1207 0.11674740002476168 No Hit CTACTTAATACTTCAGTACTTCTAGCATCAGGTGTTTCAATTACATGAGC 1131 0.10939627955924229 No Hit GTATAGGAAAAGTCAGACTACGTCTACAAAATGTCAGTATCATGCTGCGG 1128 0.10910610375139285 No Hit ACTACATAGTATGTATCGTGAAGCACGATGTCAAGGGATGAGTTGGATAA 1088 0.10523709298006685 No Hit ACATAGTATGTATCGTGAAGCACGATGTCAAGGGATGAGTTGGATAAAAC 1066 0.10310913705583757 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 9.672526928314969E-5 0.0 9 0.0 0.0 0.0 1.9345053856629937E-4 0.0 10-11 0.0 0.0 0.0 1.9345053856629937E-4 0.0 12-13 0.0 0.0 0.0 1.9345053856629937E-4 0.0 14-15 0.0 0.0 0.0 4.352637117741736E-4 0.0 16-17 0.0 0.0 0.0 5.803516156988981E-4 0.0 18-19 0.0 0.0 0.0 7.254395196236226E-4 0.0 20-21 0.0 0.0 0.0 9.672526928314969E-4 0.0 22-23 0.0 0.0 0.0 0.001209065866039371 0.0 24-25 0.0 0.0 0.0 0.001547604308530395 0.0 26-27 0.0 0.0 0.0 0.0022730438281540173 0.0 28-29 0.0 0.0 0.0 0.003965736040609137 0.0 30-31 0.0 0.0 0.0 0.00918890058189922 0.0 32-33 0.0 0.0 0.0 0.025438745821468364 0.0 34-35 0.0 0.0 0.0 0.048217546737650115 0.0 36-37 0.0 0.0 0.0 0.08294191841030085 0.0 38-39 0.0 0.0 0.0 0.15413171660269903 0.0 40-41 0.0 0.0 0.0 0.2484872167884115 0.0 42-43 0.0 0.0 0.0 0.33819990404853284 0.0 44-45 0.0 0.0 0.0 0.44082541475795467 0.0 46-47 0.0 0.0 0.0 0.5566055620898849 0.0 48-49 0.0 0.0 0.0 0.6869428624489291 0.0 50-51 0.0 0.0 0.0 0.8219229757335644 0.0 52-53 0.0 0.0 0.0 0.9627066051751888 0.0 54-55 0.0 0.0 0.0 1.1145652779497337 0.0 56-57 0.0 0.0 0.0 1.2842697629070199 0.0 58-59 0.0 0.0 0.0 1.4936316082703973 0.0 60-61 0.0 0.0 0.0 1.7182760461805127 0.0 62-63 0.0 0.0 0.0 1.944806626841649 0.0 64-65 0.0 0.0 0.0 2.1683870867896493 0.0 66-67 0.0 0.0 0.0 2.4190989847715736 0.0 68-69 0.0 0.0 0.0 2.7146430450662375 0.0 70-71 0.0 0.0 0.0 3.0521658722297884 0.0 72-73 0.0 0.0 0.0 3.4056000061904173 0.0 74-75 0.0 0.0 0.0 3.751634657050885 0.0 76-77 0.0 0.0 0.0 4.10124814287483 0.0 78-79 0.0 0.0 0.0 4.5130559768478395 0.0 80-81 0.0 0.0 0.0 4.975596214559861 0.0 82-83 0.0 0.0 0.0 5.474940417234121 0.0 84-85 0.0 0.0 0.0 5.961516884363006 0.0 86-87 0.0 0.0 0.0 6.465165361520366 0.0 88-89 0.0 0.0 0.0 7.029218769345054 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCGTGCG 55 8.2031147E-7 51.80613 9 GGTATCA 790 0.0 46.516167 1 ACCGTGC 105 1.029548E-9 40.704815 8 GTATCAA 1600 0.0 40.26744 1 TCAACGC 1750 0.0 35.820236 4 ATCAACG 1760 0.0 35.616714 3 TGCGCGG 45 2.4177309E-5 31.659302 12-13 TAACGCA 75 3.0824394E-4 31.6593 4 CAACGCA 1985 0.0 31.579554 5 AACGCAG 2090 0.0 30.44746 6 TATCAAC 2175 0.0 29.25756 2 TCCGGGA 65 0.0058504515 29.223969 2 TCGCACC 380 0.0 28.885807 1 ACGCAGA 2295 0.0 27.934677 7 GTACATG 4570 0.0 27.88273 1 CGCACCA 395 0.0 27.651794 2 ACATGGG 4485 0.0 27.42394 3 CGCAGAG 2335 0.0 27.25276 8 AAATGCG 90 8.959098E-4 26.382751 6 CATGGGA 2400 0.0 25.12957 4 >>END_MODULE