##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3224478_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 135184 Sequences flagged as poor quality 0 Sequence length 101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.21583915256243 34.0 31.0 34.0 31.0 34.0 2 32.390785891821515 34.0 31.0 34.0 31.0 34.0 3 32.53300686471772 34.0 31.0 34.0 31.0 34.0 4 35.81997869570363 37.0 37.0 37.0 35.0 37.0 5 35.84424192212096 37.0 37.0 37.0 35.0 37.0 6 35.95543851343354 37.0 37.0 37.0 35.0 37.0 7 35.902140785891824 37.0 37.0 37.0 35.0 37.0 8 35.94739762102024 37.0 37.0 37.0 35.0 37.0 9 37.67266096579477 39.0 39.0 39.0 35.0 39.0 10-11 37.74482187241094 39.0 39.0 39.0 36.0 39.0 12-13 37.757922535211264 39.0 39.0 39.0 35.0 39.0 14-15 39.26148434726003 41.0 40.0 41.0 37.0 41.0 16-17 39.10714655580542 41.0 40.0 41.0 36.5 41.0 18-19 39.203026985442065 41.0 40.0 41.0 36.5 41.0 20-21 39.27955601254587 41.0 40.0 41.0 37.0 41.0 22-23 39.23733577938218 41.0 40.0 41.0 37.0 41.0 24-25 39.17827553556634 41.0 40.0 41.0 36.0 41.0 26-27 39.033247277784355 41.0 39.5 41.0 36.0 41.0 28-29 38.949505858681505 41.0 39.0 41.0 35.5 41.0 30-31 38.85644380991833 41.0 39.0 41.0 35.0 41.0 32-33 38.64333057166529 41.0 39.0 41.0 35.0 41.0 34-35 38.66024455556871 41.0 39.0 41.0 35.0 41.0 36-37 38.668385311871226 41.0 39.0 41.0 35.0 41.0 38-39 38.55093428216357 40.5 39.0 41.0 35.0 41.0 40-41 38.464995857497925 40.0 39.0 41.0 35.0 41.0 42-43 38.327575748609306 40.0 38.0 41.0 34.0 41.0 44-45 38.14949624215883 40.0 38.0 41.0 33.5 41.0 46-47 37.95982142857143 40.0 38.0 41.0 33.0 41.0 48-49 37.761817226890756 40.0 37.5 41.0 33.0 41.0 50-51 36.535484968635345 39.0 36.0 40.0 31.5 40.5 52-53 36.88138759024737 39.5 36.5 40.0 31.5 40.5 54-55 37.370957361817965 40.0 36.5 41.0 33.0 41.0 56-57 37.272180879394014 40.0 36.0 41.0 32.0 41.0 58-59 37.16155388211622 40.0 35.5 41.0 32.0 41.0 60-61 36.973695111847555 40.0 35.0 41.0 32.0 41.0 62-63 36.72690924961534 39.0 35.0 41.0 31.0 41.0 64-65 36.53185658066043 39.0 35.0 41.0 31.0 41.0 66-67 36.31202657119186 38.5 35.0 41.0 31.0 41.0 68-69 36.04598547165345 38.0 35.0 41.0 30.5 41.0 70-71 35.779607793821754 37.0 35.0 40.0 30.0 41.0 72-73 35.4608200674636 37.0 35.0 40.0 30.0 41.0 74-75 35.18868727068292 36.0 35.0 39.0 30.0 41.0 76-77 34.82243830630844 36.0 35.0 39.0 29.0 41.0 78-79 34.53416454610013 35.5 34.5 38.5 29.0 40.0 80-81 34.17135163924725 35.0 34.0 37.0 29.0 39.0 82-83 33.85271185939165 35.0 34.0 37.0 29.0 39.0 84-85 33.554392531660554 35.0 34.0 36.5 29.0 38.0 86-87 33.280018345366315 35.0 34.0 36.0 28.0 37.0 88-89 33.05243224050184 35.0 34.0 36.0 27.0 37.0 90-91 32.845913717599714 35.0 34.0 35.0 27.0 36.5 92-93 32.67042327494378 35.0 34.0 35.0 27.0 36.0 94-95 32.50367647058823 35.0 33.0 35.0 26.0 36.0 96-97 32.34932388448337 35.0 33.0 35.0 25.5 36.0 98-99 32.27671913835957 35.0 33.0 35.0 25.0 35.5 100-101 31.17959595810155 34.5 31.0 35.0 22.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 6 1.0 7 19.0 8 82.0 9 67.0 10 53.0 11 121.0 12 254.0 13 245.0 14 276.0 15 265.0 16 300.0 17 356.0 18 430.0 19 461.0 20 555.0 21 757.0 22 852.0 23 756.0 24 701.0 25 641.0 26 717.0 27 777.0 28 810.0 29 977.0 30 1207.0 31 1422.0 32 1894.0 33 2738.0 34 4328.0 35 7477.0 36 15583.0 37 27404.0 38 43207.0 39 19449.0 40 2.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.95364827218304 21.290231758639084 13.672129690000592 23.083990279177286 2 14.597141673570837 21.03059533672624 40.951591904367376 23.42067108533554 3 18.952686708486212 27.958190318380872 29.792726949934906 23.296396023198014 4 11.535388803408688 18.067966623269026 41.703160137294354 28.693484436027934 5 12.045804237187834 39.303467866019645 36.35933246538052 12.291395431412 6 26.65182270091135 40.54030062729317 19.791543377914547 13.016333293880933 7 23.90519588116937 33.175523730619005 24.981506687181916 17.93777370102971 8 23.820126642206176 36.617499112320985 22.07509764469168 17.487276600781158 9 24.85797135755711 16.8437093147118 22.35841519706474 35.93990413066635 10-11 23.897058823529413 26.883728843650132 29.51384779263818 19.70536454018227 12-13 24.467762457095514 24.35606284767428 29.769055509527753 21.40711918570245 14-15 21.515835429924522 26.401139558975878 27.056015983424597 25.027009027675 16-17 21.2481910408871 29.68543542709941 27.9510553957873 21.11531813622619 18-19 21.204341489038995 28.549655595918942 29.23661411205895 21.00938880298311 20-21 21.93449804278494 27.33922347770107 29.344906431060892 21.3813720484531 22-23 21.767627422243933 28.10839217776199 28.803422599221328 21.32055780077275 24-25 21.420697512688104 27.64859506088809 29.229983871683707 21.700723554740097 26-27 21.39380400047343 28.392043437093147 29.114022369511183 21.10013019292224 28-29 21.21552846490709 28.456030299443718 28.97791158717008 21.35052964847911 30-31 21.228103917623386 27.4943780329033 29.666602556515564 21.610915492957748 32-33 21.064992898567876 28.023656645756894 29.426929222393184 21.484421233282045 34-35 21.62903893951947 27.846860575216002 28.96718546573559 21.556915019528937 36-37 21.250402287582908 27.620418083150533 29.605406745114287 21.523772884152272 38-39 21.43594258005097 27.66802658687153 29.050262798723182 21.84576803435432 40-41 21.716310535251278 27.646203751308445 29.104634948346458 21.53285076509382 42-43 21.530603186814812 27.60056812297495 29.158467843351925 21.710360846858308 44-45 21.767708525984837 27.84797484742001 28.824116885518773 21.56019974107638 46-47 21.706710853355425 27.62050242632264 28.58215469286306 22.09063202745887 48-49 21.57023020475796 27.950792993253636 28.4253314001657 22.0536454018227 50-51 21.541750503018108 28.484879867439933 27.913436501361105 22.05993312818085 52-53 21.917164753225236 28.161246893123447 27.85092910403598 22.07065924961534 54-55 21.826177654160254 27.697434607645878 28.265919043673808 22.21046869452006 56-57 22.112084270327852 28.19712391999053 27.78731210794177 21.90347970173985 58-59 22.111497046301125 28.082148709583155 28.1838728411365 21.622481402979222 60-61 22.044048887310606 27.918590198863637 27.998490767045453 22.038870146780305 62-63 21.85773953319744 27.81725963441568 28.50980551743018 21.815195314956696 64-65 22.58146875011563 27.51529100078814 27.74618233755277 22.157057911543458 66-67 21.479275713466624 27.93053063791222 27.571716573880558 23.018477074740602 68-69 21.813232335187596 27.705571665285834 28.657607409160846 21.823588590365723 70-71 21.89053438276719 27.503624689312346 28.252233992188426 22.35360693573204 72-73 21.970055627884957 27.472555923777964 28.403139424783998 22.15424902355308 74-75 21.926041543377913 27.666735708367856 28.0428896910877 22.364333057166526 76-77 21.83172564800568 27.51583027577228 27.944875133151854 22.707568943070186 78-79 21.93681079861355 26.863363802153657 28.266828443648713 22.93299695558408 80-81 21.617940937014286 27.547553845015173 28.204796092073124 22.629709125897417 82-83 21.50493071102148 27.826971821865342 28.338359636626027 22.32973783048715 84-85 21.507818771711104 27.27450973138348 28.78499210169028 22.432679395215143 86-87 21.144117505560345 28.270242064710953 28.135165441108445 22.450474988620257 88-89 21.903835196791547 27.517518480424442 27.760224354942544 22.81842196784147 90-91 21.63828559592851 27.394514143685644 28.2071103089123 22.760089951473546 92-93 21.583124972259622 27.30430086845882 28.717210871269845 22.39536328801172 94-95 21.81397206770032 27.435939164398153 28.319179784589892 22.430908983311635 96-97 21.835794176825658 27.725914309385725 28.403879157296725 22.03441235649189 98-99 20.866082029241735 27.917978155618105 28.307448764087333 22.908491051052827 100-101 21.567647973002977 27.42588398975771 28.01052351138937 22.99594452584995 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1.0 1 1.5 2 1.5 3 3.5 4 3.0 5 1.5 6 4.5 7 7.5 8 9.5 9 11.5 10 11.5 11 14.5 12 16.0 13 14.5 14 19.5 15 25.0 16 29.5 17 41.5 18 47.5 19 46.5 20 50.0 21 57.0 22 71.5 23 100.0 24 152.5 25 210.5 26 271.0 27 364.0 28 526.5 29 750.0 30 1144.0 31 1784.0 32 2666.0 33 3946.0 34 5232.5 35 6118.5 36 6971.5 37 7625.0 38 7202.0 39 6582.5 40 5969.5 41 5075.0 42 4406.0 43 3798.5 44 3415.0 45 3373.5 46 3441.5 47 3350.5 48 3470.5 49 3773.5 50 4111.5 51 4075.0 52 3840.5 53 3988.5 54 4116.0 55 4097.5 56 3525.5 57 2839.0 58 2541.0 59 2341.0 60 2031.5 61 1525.0 62 1192.5 63 869.5 64 507.0 65 331.0 66 260.5 67 223.5 68 189.5 69 120.0 70 61.0 71 39.5 72 28.0 73 26.0 74 22.0 75 16.5 76 14.5 77 9.0 78 6.5 79 5.0 80 1.5 81 1.0 82 2.0 83 2.0 84 2.5 85 1.5 86 0.5 87 1.5 88 1.5 89 1.0 90 1.0 91 1.0 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.5 100 0.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.15978222274825424 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.03254823055982957 16-17 0.06842525742691442 18-19 0.01701384779263818 20-21 0.031808498047106164 22-23 0.060658066043318734 24-25 0.013315185229021184 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.014424783998106285 38-39 0.003328796307255296 40-41 0.003328796307255296 42-43 0.0014794650254467984 44-45 0.006657592614510592 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.010726121434489288 60-61 0.011835720203574387 62-63 0.022561841638063674 64-65 0.04105515445614866 66-67 0.012205586459936087 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.013685051485382887 80-81 0.05474020594153155 82-83 0.045493549532489054 84-85 0.021082376612616877 86-87 0.055849804710616645 88-89 0.030329033021659367 90-91 0.0 92-93 0.0014794650254467984 94-95 0.0 96-97 0.0 98-99 3.698662563616996E-4 100-101 0.04290448573795715 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 135184.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 62.29213516392472 #Duplication Level Percentage of deduplicated Percentage of total 1 81.40341293685948 50.707924014676294 2 10.117683383011316 12.605042016806722 3 3.171869990143571 5.9274766244525985 4 1.6126542293579071 4.018227009113504 5 0.9072664442043012 2.825778198603385 6 0.5878231542946716 2.1970055627884957 7 0.402569796577563 1.7553852526926266 8 0.29688038095690483 1.4794650254467985 9 0.21969148190810958 1.2316546336844596 >10 1.2053343466850337 13.083648952538763 >50 0.05225094704841525 2.0956622085453898 >100 0.022562908952724767 2.0727305006509646 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source ACCAAAGGCCGTGCAATCGCGCAACGATAAACCTAAATGTTGGGTCAGCA 252 0.1864125932062966 No Hit GTCTAATGTTATTAAATATGTTAAATAAACTTGATGGCGGTGCCAGCGTC 245 0.1812344656172328 No Hit TCGCACCACTGTGCGGCGACTGCTGGAGACGCTGCAGGAAGAGGGATATG 239 0.1767960705408924 No Hit GCCCATAATAAATCCGCTACCGACGCTGACTAACATTTCGCGATCGTTCA 199 0.14720677003195642 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 163 0.12057639957391408 No Hit TAATAAATCCGCTACCGACGCTGACTAACATTTCGCGATCGTTCATCGCA 161 0.11909693454846729 No Hit ATACAAAACCGTGCGCGGCTTAACCCGCGGTCTAATGTTATTAAATATGT 147 0.10874067937033968 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10-11 0.0 0.0 0.0 0.0 0.0 12-13 0.0 0.0 0.0 0.0 0.0 14-15 0.0 0.0 0.0 0.0 0.0 16-17 0.0 0.0 0.0 0.0 0.0 18-19 0.0 0.0 0.0 0.0 0.0 20-21 0.0 0.0 0.0 0.0 0.0 22-23 0.0 0.0 0.0 0.0 0.0 24-25 0.0 0.0 0.0 7.397325127233992E-4 0.0 26-27 0.0 0.0 0.0 0.0014794650254467984 0.0 28-29 0.0 0.0 0.0 0.0025890637945318973 0.0 30-31 0.0 0.0 0.0 0.006287726358148893 0.0 32-33 0.0 0.0 0.0 0.013315185229021188 0.0 34-35 0.0 0.0 0.0 0.02921943425257427 0.0 36-37 0.0 0.0 0.0 0.055110072197893246 0.0 38-39 0.0 0.0 0.0 0.09875429044857378 0.0 40-41 0.0 0.0 0.0 0.15090543259557343 0.0 42-43 0.0 0.0 0.0 0.2004675109480412 0.0 44-45 0.0 0.0 0.0 0.25631731565865784 0.0 46-47 0.0 0.0 0.0 0.31475618416380635 0.0 48-49 0.0 0.0 0.0 0.37393478518167833 0.0 50-51 0.0 0.0 0.0 0.44272990886495445 0.0 52-53 0.0 0.0 0.0 0.5063469049591668 0.0 54-55 0.0 0.0 0.0 0.5788406912060599 0.0 56-57 0.0 0.0 0.0 0.6720469878092081 0.0 58-59 0.0 0.0 0.0 0.7715410107705054 0.0 60-61 0.0 0.0 0.0 0.8762131613208664 0.0 62-63 0.0 0.0 0.0 0.9912415670493551 0.0 64-65 0.0 0.0 0.0 1.1136672979050775 0.0 66-67 0.0 0.0 0.0 1.257175405373417 0.0 68-69 0.0 0.0 0.0 1.4114096342762457 0.0 70-71 0.0 0.0 0.0 1.5656438631790746 0.0 72-73 0.0 0.0 0.0 1.737631672387265 0.0 74-75 0.0 0.0 0.0 1.9410581133861995 0.0 76-77 0.0 0.0 0.0 2.147443484436028 0.0 78-79 0.0 0.0 0.0 2.3841578885075156 0.0 80-81 0.0 0.0 0.0 2.6430642679607055 0.0 82-83 0.0 0.0 0.0 2.9223132915137886 0.0 84-85 0.0 0.0 0.0 3.1960143212214467 0.0 86-87 0.0 0.0 0.0 3.510400639128891 0.0 88-89 0.0 0.0 0.0 3.8676914427742926 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTGA 20 0.0020554208 71.377914 1 GGTATCA 140 0.0 61.181072 1 CCGTGCG 35 2.774845E-4 54.30264 9 ACCGTGC 55 4.9525042E-5 43.163322 8 TAGGGCA 45 9.6151617E-4 42.204136 4 AACCGTG 75 6.8973422E-6 37.98372 7 GTATCAA 250 0.0 34.18535 2 CCATAAT 140 4.5110937E-10 33.914036 3 GCCCATA 120 1.4658872E-7 31.72352 1 CAATAAG 75 3.032095E-4 31.723518 1 AAACCGT 60 0.0039470037 31.653101 6 TAATACT 80 4.484157E-4 29.674784 4 CATAATA 160 1.882654E-9 29.674784 4 ATCTAAT 65 0.0057751904 29.28325 1 GTTACTC 65 0.0058382913 29.21825 3 TACAGGC 65 0.0058382913 29.21825 7 AGTACCA 65 0.0058382913 29.21825 5 ACGCAGA 295 0.0 28.970636 8 GTACATG 415 0.0 28.665833 1 TCAACGC 300 0.0 28.48779 5 >>END_MODULE