##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3224478_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 135184 Sequences flagged as poor quality 0 Sequence length 101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.16345869333649 34.0 33.0 34.0 31.0 34.0 2 33.29282311516156 34.0 33.0 34.0 31.0 34.0 3 33.41594419457924 34.0 34.0 34.0 31.0 34.0 4 36.62487424547284 37.0 37.0 37.0 35.0 37.0 5 36.667778731210795 37.0 37.0 37.0 35.0 37.0 6 36.704336311989586 37.0 37.0 37.0 36.0 37.0 7 36.68050213042964 37.0 37.0 37.0 36.0 37.0 8 36.662275121316135 37.0 37.0 37.0 35.0 37.0 9 38.52143744821873 39.0 39.0 39.0 37.0 39.0 10-11 38.55139661498402 39.0 39.0 39.0 37.5 39.0 12-13 38.54862631672387 39.0 39.0 39.0 37.5 39.0 14-15 40.15451902592022 41.0 40.0 41.0 38.0 41.0 16-17 40.16948751331519 41.0 40.0 41.0 38.0 41.0 18-19 40.171458900461595 41.0 40.0 41.0 38.5 41.0 20-21 40.183516540418985 41.0 40.0 41.0 39.0 41.0 22-23 40.116988696887205 41.0 40.0 41.0 38.5 41.0 24-25 40.09535152089005 41.0 40.0 41.0 38.0 41.0 26-27 40.04341490117173 41.0 40.0 41.0 38.0 41.0 28-29 39.99976328559593 41.0 40.0 41.0 38.0 41.0 30-31 39.923252751804945 41.0 40.0 41.0 38.0 41.0 32-33 39.858429991715 41.0 40.0 41.0 38.0 41.0 34-35 39.77855737365368 41.0 40.0 41.0 37.5 41.0 36-37 39.67943691561132 41.0 40.0 41.0 37.0 41.0 38-39 39.573041188306306 41.0 40.0 41.0 37.0 41.0 40-41 39.442726210202395 41.0 40.0 41.0 36.5 41.0 42-43 39.362317286069356 41.0 39.5 41.0 36.0 41.0 44-45 39.126353710498286 41.0 39.0 41.0 35.0 41.0 46-47 38.88987971949343 41.0 39.0 41.0 35.0 41.0 48-49 38.78607675464552 41.0 39.0 41.0 35.0 41.0 50-51 38.665026926263465 40.5 38.5 41.0 35.0 41.0 52-53 38.47637294354361 40.0 38.0 41.0 35.0 41.0 54-55 38.323847496745174 40.0 37.5 41.0 35.0 41.0 56-57 38.140841371759976 40.0 37.0 41.0 35.0 41.0 58-59 37.94527089004616 40.0 36.5 41.0 34.0 41.0 60-61 37.73554192803882 40.0 36.0 41.0 34.0 41.0 62-63 37.574483666706115 39.5 35.0 41.0 34.0 41.0 64-65 37.34352068292105 39.0 35.0 41.0 34.0 41.0 66-67 37.09093161912652 39.0 35.0 41.0 33.0 41.0 68-69 36.87432684341342 38.5 35.0 41.0 33.0 41.0 70-71 36.608196975973485 37.5 35.0 40.5 33.0 41.0 72-73 36.3173896319091 37.0 35.0 40.0 33.0 41.0 74-75 35.98467644099893 36.5 35.0 39.0 33.0 41.0 76-77 34.05334950881761 34.5 33.0 37.5 29.5 39.0 78-79 35.338261184755595 36.0 35.0 39.0 32.5 40.0 80-81 35.213553379098116 35.5 35.0 37.5 33.0 39.0 82-83 34.93186693691561 35.0 35.0 37.0 33.0 39.0 84-85 34.640046159308795 35.0 35.0 37.0 33.0 39.0 86-87 34.37016214936679 35.0 35.0 36.0 32.0 37.0 88-89 34.14911897857735 35.0 35.0 36.0 32.0 37.0 90-91 33.96599449639011 35.0 35.0 36.0 32.0 37.0 92-93 33.82039664457332 35.0 35.0 35.0 32.0 36.0 94-95 33.703378358385606 35.0 34.5 35.0 32.0 36.0 96-97 33.62074653805184 35.0 34.0 35.0 31.0 36.0 98-99 33.55092688483845 35.0 34.0 35.0 31.0 36.0 100-101 32.7893722629897 34.5 33.0 35.0 28.5 35.5 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 0.0 14 2.0 15 6.0 16 22.0 17 38.0 18 76.0 19 175.0 20 241.0 21 387.0 22 626.0 23 574.0 24 407.0 25 343.0 26 440.0 27 532.0 28 681.0 29 797.0 30 855.0 31 1039.0 32 1248.0 33 1711.0 34 2655.0 35 5124.0 36 13847.0 37 29030.0 38 48311.0 39 25991.0 40 25.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.22062015042959 21.681481701697535 13.694740910307102 22.403157237565775 2 14.423304533080838 21.454462066516747 42.086341578885076 22.03589182151734 3 18.437093147118002 28.348029352586106 30.499911232098476 22.71496626819742 4 11.727719256716771 17.965143804000476 42.425139069712394 27.881997869570363 5 11.542786128535921 39.012013256006625 37.30840927920464 12.136791336252811 6 27.00689430701858 40.25624334240738 20.16214936678897 12.574712983785064 7 24.07311516155758 32.9129186886022 25.40907207953604 17.604894070304177 8 23.403657237542905 36.74695230204758 22.324387501479464 17.52500295893005 9 24.877204402887916 16.831133861995504 22.41019647295538 35.88146526216121 10-11 23.943292105574624 26.649233637116822 30.022044028879158 19.3854302284294 12-13 24.6427091963546 24.730737365368682 29.917002012072437 20.709551426204285 14-15 21.808424073854894 26.90222215646822 27.119703515208897 24.169650254467985 16-17 20.825319564445497 29.754260859273284 28.103547757131018 21.316871819150197 18-19 20.79757959521837 28.532592614510595 29.882234583974437 20.787593206296602 20-21 21.843191501952894 27.515460409515917 29.769055509527753 20.87229257900343 22-23 21.699763654588022 28.052609970891417 29.211405238065296 21.036221136455264 24-25 21.46608671208658 27.79121635116842 29.12459406878084 21.61810286796417 26-27 21.444053202349426 28.49047950170881 29.3219511473421 20.743516148599667 28-29 21.259801745820386 28.366992158603345 29.343098091433646 21.030108004142626 30-31 21.44751393476275 27.59730292528304 29.371927787045017 21.583255352909195 32-33 21.28728251864126 28.121301337436382 29.695082258255418 20.896333885666944 34-35 21.86829607492122 27.71966681954698 29.091521060496223 21.320516045035582 36-37 21.290847557930945 27.704399607937418 29.51417528156381 21.490577552567824 38-39 21.610545626701384 27.962258847200854 28.80999230678187 21.617203219315893 40-41 21.58391525624334 27.853148301574148 29.25864007574861 21.3042963664339 42-43 21.586504320037875 27.95523138832998 29.033761391880695 21.42450289975145 44-45 21.79532230799676 27.821651433158127 28.670930322881333 21.71209593596378 46-47 21.72562751942432 27.76077082816647 28.616958663858362 21.896642988550845 48-49 21.544049384725206 27.562905236215958 28.894798551598385 21.998246827460452 50-51 21.545449165581726 28.146822109125342 28.220425494141317 22.087303231151616 52-53 21.865383477334596 28.274056101313764 28.169383950763404 21.691176470588236 54-55 21.75553319919517 27.555405965202983 28.601757604450228 22.087303231151616 56-57 21.949451272965344 27.663462214216228 28.040376840649078 22.34670967216935 58-59 22.112296695327878 27.57062941202587 28.56994864660875 21.747125246037502 60-61 21.90603033666297 27.803551609322973 28.416574176840548 21.87384387717351 62-63 21.822848857853 27.67820156231507 28.528154219434253 21.97079536039768 64-65 22.17976979524204 27.575748609302874 28.22967215055036 22.014809444904724 66-67 21.556915019528937 27.77584625399456 27.97964256124985 22.687596165226655 68-69 21.797328086164043 27.716667652976685 28.41053674991123 22.07546751094804 70-71 22.15498875606581 27.66599597585513 28.018478518167832 22.160536749911234 72-73 22.10986507278968 27.44592555331992 28.189726594863295 22.254482779027104 74-75 21.799547283702214 27.540981181204877 28.236329743164873 22.42314179192804 76-77 21.81775142676436 27.545521457870226 28.042623545033234 22.594103570332177 78-79 21.777292818701337 27.091046956779053 28.25322261471029 22.878437609809325 80-81 21.50540020713123 27.62538837106081 28.21608226068945 22.65312916111851 82-83 21.401808666062543 27.758770550921902 28.715255303016292 22.12416547999926 84-85 21.43472712814159 27.631165276570563 28.443030717733436 22.491076877554416 86-87 21.225144987572495 28.08394484554385 28.284412356491895 22.406497810391762 88-89 21.84947922831104 27.512131613208663 27.701133270209493 22.9372558882708 90-91 21.76810865191147 27.634557344064387 28.03771156349864 22.559622440525505 92-93 21.53768197419813 27.59978991596639 28.586962954195762 22.275565155639722 94-95 21.646052787312108 27.745147354716536 27.79286010178719 22.815939756184164 96-97 21.754793466682447 27.71851698425849 28.2766451651083 22.250044383950762 98-99 20.475056219670968 28.632826369984617 28.236699609421233 22.655417800923185 100-101 21.291896133120154 28.026736542902825 27.881284419968022 22.800082904009 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 3.0 1 1.5 2 2.0 3 3.0 4 2.5 5 4.0 6 3.5 7 5.5 8 16.0 9 20.5 10 20.0 11 21.5 12 22.0 13 25.5 14 26.5 15 22.0 16 20.5 17 28.0 18 35.5 19 39.5 20 45.0 21 65.5 22 90.5 23 117.5 24 144.0 25 194.0 26 291.5 27 390.5 28 505.0 29 770.5 30 1228.0 31 1929.0 32 2896.0 33 4076.0 34 5392.0 35 6461.5 36 7222.5 37 7592.5 38 7336.5 39 6579.5 40 5664.5 41 4851.0 42 4178.5 43 3682.0 44 3414.0 45 3398.5 46 3361.5 47 3364.5 48 3524.5 49 3836.5 50 4170.5 51 4051.0 52 3721.0 53 3804.5 54 4122.5 55 4053.0 56 3374.0 57 2763.5 58 2590.0 59 2507.0 60 2037.0 61 1458.5 62 1174.5 63 807.0 64 467.0 65 297.5 66 233.0 67 190.0 68 150.0 69 106.5 70 56.5 71 33.5 72 21.0 73 16.0 74 15.0 75 13.0 76 8.0 77 7.5 78 4.5 79 0.0 80 1.0 81 1.5 82 1.0 83 1.0 84 1.0 85 0.5 86 0.5 87 0.5 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.47046987809208185 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 3.698662563616996E-4 24-25 7.397325127233992E-4 26-27 0.0014794650254467984 28-29 0.002958930050893597 30-31 3.698662563616996E-4 32-33 0.0 34-35 0.0014794650254467984 36-37 0.0011095987690850988 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.007767191383595692 46-47 0.08026097763048881 48-49 3.698662563616996E-4 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0055479938454254946 58-59 0.03106876553438277 60-61 0.025150905432595575 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 3.698662563616996E-4 78-79 0.004808261332702095 80-81 0.002958930050893597 82-83 0.0011095987690850988 84-85 0.0011095987690850988 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.06509646111965914 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 135184.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 60.14617114451415 #Duplication Level Percentage of deduplicated Percentage of total 1 79.93309391449796 48.07669546691916 2 10.921434545186205 13.13764942596757 3 3.4154080779259113 6.162711563498639 4 1.6714222462734292 4.021185939164399 5 1.018349977861957 3.062492602674873 6 0.6346238992473066 2.290211859391644 7 0.4612092291041472 1.9417978458989231 8 0.30378314556993163 1.4617114451414368 9 0.25212771191026717 1.3648064859746716 >10 1.307374428100556 14.057136939282755 >50 0.0541152162148866 2.171114924843177 >100 0.0270576081074433 2.2524855012427505 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTCTAATGTTATTAAATATGTTAAATAAACTTGATGGCGGTGCCAGCGTC 219 0.16200142028642442 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 189 0.13980944490472244 No Hit ATACAAAACCGTGCGCGGCTTAACCCGCGGTCTAATGTTATTAAATATGT 182 0.13463131731565867 No Hit ACCAAAGGCCGTGCAATCGCGCAACGATAAACCTAAATGTTGGGTCAGCA 177 0.13093265475204166 No Hit TCGCACCACTGTGCGGCGACTGCTGGAGACGCTGCAGGAAGAGGGATATG 167 0.12353532962480766 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 162 0.11983666706119067 No Hit GTACATGGGGGGAATTCGTGGAGAAAGAAATGGCTCGTCTGGCAGCATTT 140 0.1035625517812759 No Hit CTTTATTGGTGCCCGACCATCATTTAGGTGAGAAAACCCTCTCTACTTTG 140 0.1035625517812759 No Hit ACATTACCCTCACTTTTGCCACGGGGCGTCATGCGCTGGAGATGCAGCAT 137 0.10134335424310568 No Hit GTCTTGTTCCGGGCAAAAGGCCAGCCAGGTCAGGCCCGAGGCGGTTTTCA 136 0.1006036217303823 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10-11 0.0 0.0 0.0 0.0 0.0 12-13 0.0 0.0 0.0 0.0 0.0 14-15 0.0 0.0 0.0 0.0 0.0 16-17 0.0 0.0 0.0 0.0 0.0 18-19 0.0 0.0 0.0 0.0 0.0 20-21 0.0 0.0 0.0 0.0 0.0 22-23 0.0 0.0 0.0 0.0 0.0 24-25 0.0 0.0 0.0 7.397325127233992E-4 0.0 26-27 0.0 0.0 0.0 0.0014794650254467984 0.0 28-29 0.0 0.0 0.0 0.0025890637945318973 0.0 30-31 0.0 7.397325127233992E-4 0.0 0.006287726358148893 0.0 32-33 0.0 7.397325127233992E-4 0.0 0.013315185229021188 0.0 34-35 0.0 7.397325127233992E-4 0.0 0.02958930050893597 0.0 36-37 0.0 7.397325127233992E-4 0.0 0.055479938454254946 0.0 38-39 0.0 7.397325127233992E-4 0.0 0.0980145579358504 0.0 40-41 0.0 7.397325127233992E-4 0.0 0.15053556633921172 0.0 42-43 0.0 7.397325127233992E-4 0.0 0.20120724346076457 0.0 44-45 0.0 7.397325127233992E-4 0.0 0.2577967806841046 0.0 46-47 0.0 7.397325127233992E-4 0.0 0.31549591667652976 0.0 48-49 0.0 7.397325127233992E-4 0.0 0.3754142502071251 0.0 50-51 0.0 7.397325127233992E-4 0.0 0.4445792401467629 0.0 52-53 0.0 7.397325127233992E-4 0.0 0.5130044975736774 0.0 54-55 0.0 7.397325127233992E-4 0.0 0.5858681500769322 0.0 56-57 0.0 7.397325127233992E-4 0.0 0.6812936442182507 0.0 58-59 0.0 7.397325127233992E-4 0.0 0.7844863297431648 0.0 60-61 0.0 7.397325127233992E-4 0.0 0.891377677831696 0.0 62-63 0.0 7.397325127233992E-4 0.0 1.008255414841993 0.0 64-65 0.0 7.397325127233992E-4 0.0 1.129201680672269 0.0 66-67 0.0 7.397325127233992E-4 0.0 1.2749289856787787 0.0 68-69 0.0 7.397325127233992E-4 0.0 1.4306426796070542 0.0 70-71 0.0 7.397325127233992E-4 0.0 1.588205704817138 0.0 72-73 0.0 7.397325127233992E-4 0.0 1.7613031127944137 0.0 74-75 0.0 7.397325127233992E-4 0.0 1.9669487513315185 0.0 76-77 0.0 7.397325127233992E-4 0.0 2.1751834536631556 0.0 78-79 0.0 7.397325127233992E-4 0.0 2.4174458515800685 0.0 80-81 0.0 7.397325127233992E-4 0.0 2.678571428571429 0.0 82-83 0.0 7.397325127233992E-4 0.0 2.9633684459699374 0.0 84-85 0.0 7.397325127233992E-4 0.0 3.2378092081903187 0.0 86-87 0.0 7.397325127233992E-4 0.0 3.5577435199431884 0.0 88-89 0.0 7.397325127233992E-4 0.0 3.921691916203101 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 125 0.0 61.121197 1 AACCGTG 55 1.17543095E-8 60.436653 7 AAACCGT 65 4.3906766E-8 51.138706 6 CCGTGCG 70 7.869858E-8 47.485943 9 ACCGTGC 70 7.869858E-8 47.485943 8 CCAGACC 50 2.818595E-5 47.48594 8 GTATCAA 260 0.0 42.241207 1 CAGACCG 45 9.608894E-4 42.209724 9 GTGTACT 70 4.1295334E-6 40.929367 1 GTATTAA 95 1.8200808E-8 40.211308 1 ATCAACG 250 0.0 39.88819 3 TCCAGAC 60 8.266358E-5 39.571617 7 TCAACGC 260 0.0 38.35403 4 GCCCATA 50 0.0015695834 38.200745 1 TTCGATC 25 0.0015984263 38.073265 94-95 CGCTACG 25 0.0016145098 37.99578 38-39 TCGCTAC 25 0.0016145098 37.99578 38-39 ACCGAAC 25 0.0016159783 37.98875 12-13 TCGAGCG 25 0.0016159783 37.98875 78-79 TTCGCTA 25 0.0016159783 37.98875 36-37 >>END_MODULE