##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3224475_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 346417 Sequences flagged as poor quality 0 Sequence length 101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.230895135054 34.0 31.0 34.0 31.0 34.0 2 32.38936022192906 34.0 31.0 34.0 31.0 34.0 3 32.5312499097908 34.0 31.0 34.0 31.0 34.0 4 35.835109131480266 37.0 37.0 37.0 35.0 37.0 5 35.84112788922022 37.0 37.0 37.0 35.0 37.0 6 35.94775660547837 37.0 37.0 37.0 35.0 37.0 7 35.90630944786197 37.0 37.0 37.0 35.0 37.0 8 35.93714800370652 37.0 37.0 37.0 35.0 37.0 9 37.675858863739364 39.0 39.0 39.0 35.0 39.0 10-11 37.748056533022336 39.0 39.0 39.0 36.0 39.0 12-13 37.761408937783074 39.0 39.0 39.0 35.0 39.0 14-15 39.27671996466687 41.0 40.0 41.0 37.0 41.0 16-17 39.1112012401239 41.0 40.0 41.0 36.5 41.0 18-19 39.205480677911304 41.0 40.0 41.0 36.5 41.0 20-21 39.27859198595912 41.0 40.0 41.0 37.0 41.0 22-23 39.24105918589446 41.0 40.0 41.0 37.0 41.0 24-25 39.19964378191601 41.0 40.0 41.0 36.0 41.0 26-27 39.05793018241022 41.0 39.5 41.0 36.0 41.0 28-29 38.97328653039545 41.0 39.0 41.0 35.5 41.0 30-31 38.89573692976961 41.0 39.0 41.0 35.0 41.0 32-33 38.70549944142464 41.0 39.0 41.0 35.0 41.0 34-35 38.717026012002876 41.0 39.0 41.0 35.0 41.0 36-37 38.724574717753455 41.0 39.0 41.0 35.0 41.0 38-39 38.628095618863966 41.0 39.0 41.0 35.0 41.0 40-41 38.56115606335717 40.5 39.0 41.0 35.0 41.0 42-43 38.43892765077926 40.0 38.5 41.0 34.5 41.0 44-45 38.30217483553059 40.0 38.0 41.0 34.0 41.0 46-47 38.16152931293787 40.0 38.0 41.0 33.5 41.0 48-49 37.999966803014864 40.0 38.0 41.0 33.0 41.0 50-51 36.788416850212315 39.0 36.5 40.0 31.5 40.5 52-53 37.147082851014815 39.5 37.0 40.5 32.5 40.5 54-55 37.66035154163912 40.0 37.0 41.0 33.0 41.0 56-57 37.57021018021633 40.0 37.0 41.0 33.0 41.0 58-59 37.47714315405999 40.0 36.0 41.0 33.0 41.0 60-61 37.272641065536625 40.0 35.5 41.0 32.5 41.0 62-63 37.020455116232746 39.5 35.0 41.0 32.0 41.0 64-65 36.81079017484708 39.0 35.0 41.0 32.0 41.0 66-67 36.569868106934706 39.0 35.0 41.0 31.0 41.0 68-69 36.28675844430268 38.0 35.0 41.0 31.0 41.0 70-71 35.9931036871747 37.0 35.0 40.0 31.0 41.0 72-73 35.66843717254061 37.0 35.0 40.0 30.5 41.0 74-75 35.36838983075311 36.0 35.0 39.0 30.0 41.0 76-77 34.9940707297852 36.0 35.0 39.0 30.0 40.5 78-79 34.69690863901021 35.5 35.0 38.5 30.0 39.5 80-81 34.32343389614251 35.0 34.0 37.0 29.0 39.0 82-83 34.0024204932206 35.0 34.0 37.0 29.0 39.0 84-85 33.71569524590306 35.0 34.0 36.5 29.0 38.0 86-87 33.43467988002898 35.0 34.0 36.0 29.0 37.0 88-89 33.23116359762945 35.0 34.0 36.0 29.0 37.0 90-91 33.01929033505861 35.0 34.0 35.0 28.5 36.0 92-93 32.85414399408805 35.0 34.0 35.0 27.5 36.0 94-95 32.70509819090864 35.0 34.0 35.0 27.0 36.0 96-97 32.562227026964614 35.0 33.5 35.0 27.0 36.0 98-99 32.495961514590796 35.0 33.0 35.0 27.0 35.0 100-101 31.39696521821966 34.5 31.0 35.0 23.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 6 4.0 7 55.0 8 220.0 9 172.0 10 195.0 11 347.0 12 518.0 13 609.0 14 681.0 15 729.0 16 697.0 17 835.0 18 875.0 19 1049.0 20 1131.0 21 1490.0 22 1793.0 23 1672.0 24 1589.0 25 1673.0 26 1737.0 27 1887.0 28 2132.0 29 2491.0 30 2963.0 31 3598.0 32 4801.0 33 6836.0 34 10423.0 35 18016.0 36 37366.0 37 72541.0 38 117887.0 39 47399.0 40 6.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.30268863833478 20.718704827984965 13.382769586585718 23.595836947094536 2 14.876002043779607 20.927090760557363 40.70065845498345 23.496248740679583 3 17.899577386725788 27.83647406586301 29.985624220590275 24.278324326820933 4 11.863159140573355 17.639434554308824 40.69113236359648 29.806273941521344 5 12.450601442769841 39.09738840761279 35.86457939419832 12.587430755419046 6 28.326265743309364 39.36902634685942 19.467866761735134 12.836841148096081 7 25.167356105502904 32.394772773853475 24.953740722886 17.484130397757617 8 24.18357066772127 36.767826059344664 21.682538674487684 17.366064598446382 9 25.281957871582517 16.43481699801107 21.787614349180323 36.4956107812261 10-11 24.06232950461438 26.693984417623845 29.660495876357107 19.583190201404665 12-13 24.414506216496303 24.59636796115664 29.788376436491284 21.200749385855776 14-15 21.963510141847248 26.404178025227555 26.662922191932726 24.969389640992468 16-17 21.626677182232736 29.14126247459581 27.650016538905426 21.58204380426603 18-19 21.481133914198473 28.486309725761394 28.698972778263037 21.333583581777102 20-21 22.532156615859115 27.474918705995833 28.517590116497338 21.475334561647713 22-23 22.276480537056216 27.847081100052428 28.01924412919738 21.85719423369398 24-25 21.755844755779794 27.856622131756925 28.181575395364618 22.205957717098663 26-27 21.837265492166953 28.16201283424312 28.24471662764818 21.75600504594174 28-29 21.752829682146086 28.242695941596402 28.347049942699115 21.6574244335584 30-31 21.88994766423126 27.771731756813324 28.45616698949532 21.882153589460103 32-33 21.886916635153586 27.7118328488498 28.553448589416803 21.847801926579816 34-35 22.018549897955356 27.668965437608435 28.327564755771224 21.984919908664992 36-37 21.87219384587844 27.541094367624595 28.536367757415466 22.0503440290815 38-39 21.954162685227153 27.923290771624632 28.028371906385413 22.09417463676281 40-41 22.169873279954732 27.46919327296846 28.51381449132273 21.847118955754077 42-43 22.091514400072747 27.60154674665023 28.48764955420614 21.819289299070885 44-45 22.055174384950394 27.820610350935187 27.967705474854526 22.15650978925989 46-47 22.286579469252374 27.62321133200738 27.69090431474206 22.399304883998187 48-49 21.857616687402754 27.74517416870419 27.977264395223102 22.419944748669955 50-51 21.875081188278866 27.951572815421876 27.851693190576675 22.321652805722582 52-53 22.192906237280503 28.078298697812176 27.52087801695644 22.207917047950883 54-55 21.993579991744053 27.498217466232894 27.91823149556748 22.589971046455574 56-57 22.159420582708123 27.808970114053295 27.656841321297744 22.374767981940842 58-59 22.186437154620364 27.640909117156237 28.037175408103753 22.135478320119645 60-61 22.349403503909272 27.969343681068032 27.761753802446037 21.919499012576654 62-63 21.835793011645332 27.713610861662225 28.14240627860441 22.308189848088034 64-65 22.55228572707594 27.341359407243104 27.67089342419346 22.435461441487494 66-67 21.984830680482855 27.648784346786698 27.611395178962745 22.754989793767702 68-69 22.0856655418181 27.73319438711149 28.059968188628154 22.12117188244226 70-71 22.279651402789124 27.40165753990133 27.831919334212813 22.48677172309673 72-73 22.169668347685015 27.633892101138223 28.02431751328601 22.17212203789075 74-75 22.085232537664147 27.55537401455471 27.897735965613695 22.461657482167446 76-77 22.01450852585179 27.563168089325867 27.716595894543282 22.705727490279056 78-79 22.221676867998614 27.000952765908302 27.857431574084767 22.919938792008317 80-81 22.025957746092402 27.79229181740327 27.594005485007212 22.587744951497115 82-83 21.937651902545536 27.91858673409708 27.592072979651018 22.551688383706374 84-85 22.056715163748034 27.480043140601108 27.97598679793653 22.48725489771433 86-87 21.716826709916134 27.933167441007367 28.06083617242211 22.289169676654385 88-89 22.238521724943002 27.299806090463203 27.668855067420743 22.79281711717305 90-91 22.114532485414976 27.525785397367912 27.698987058949186 22.660695058267926 92-93 22.08383250819128 27.517645530520635 27.97043922576175 22.428082735526335 94-95 22.206762370207006 27.21084704272596 27.90018965581943 22.6822009312476 96-97 22.329591215211725 27.507021884029943 27.840435082573894 22.322951818184443 98-99 21.711367644978683 27.635654551070544 27.86341736597645 22.789560437974327 100-101 22.08863583526228 27.29571318620861 27.767902396901746 22.847748581627364 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.5 2 0.5 3 1.5 4 2.5 5 3.5 6 5.0 7 6.0 8 14.5 9 19.5 10 21.0 11 22.5 12 24.5 13 29.0 14 40.0 15 45.0 16 40.5 17 52.0 18 67.0 19 71.0 20 75.5 21 89.0 22 106.0 23 132.0 24 181.5 25 244.5 26 348.5 27 491.0 28 728.0 29 1260.5 30 2209.0 31 3717.0 32 5831.5 33 8355.0 34 11214.0 35 13720.0 36 16342.0 37 18541.0 38 18765.5 39 17644.5 40 16026.0 41 14407.0 42 12781.5 43 11355.0 44 10349.5 45 9927.0 46 9944.5 47 9611.0 48 9556.5 49 10047.5 50 10524.0 51 10382.0 52 10019.5 53 10187.0 54 10426.5 55 10278.0 56 8832.5 57 7354.5 58 6633.0 59 6113.5 60 5266.5 61 4066.0 62 3300.5 63 2467.0 64 1589.5 65 1097.0 66 860.0 67 725.0 68 584.0 69 390.0 70 234.5 71 163.0 72 110.5 73 86.0 74 77.0 75 54.0 76 39.0 77 23.5 78 11.0 79 7.5 80 7.0 81 8.0 82 5.5 83 3.0 84 2.0 85 0.5 86 0.5 87 0.0 88 1.0 89 2.0 90 1.5 91 3.0 92 3.0 93 1.5 94 2.5 95 2.0 96 2.0 97 1.5 98 0.5 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.14924209839586394 2 0.0 3 2.8866943596878903E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.03723835723997379 16-17 0.07606439637777591 18-19 0.027279261699050567 20-21 0.04127972934353684 22-23 0.06740431329871224 24-25 0.01717583144014295 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.023093554877503124 38-39 0.005196049847438202 40-41 0.006783731745266542 42-43 0.003608367949609863 44-45 0.012268451028673535 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.017031496722158552 60-61 0.017608835594096133 62-63 0.02828960472494133 64-65 0.04921813883267854 66-67 0.017320166158127343 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.016454157850220977 80-81 0.0578782219117422 82-83 0.0529708415002728 84-85 0.031031964366644824 86-87 0.06018757739949252 88-89 0.03507333647020787 90-91 0.0 92-93 0.003464033231625469 94-95 0.0 96-97 0.0 98-99 0.0011546777438751561 100-101 0.04546543616508428 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 346417.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 62.65088985499526 #Duplication Level Percentage of deduplicated Percentage of total 1 79.77811791452693 49.9817007830185 2 11.952067596756423 14.976153410876892 3 3.5979672910879716 6.762475573674845 4 1.6089533168201862 4.032094281357232 5 0.8585044230822116 2.6893033025274944 6 0.5397827421275017 2.029072147359445 7 0.32457245463441425 1.4234327173686292 8 0.22841242245086493 1.1448193216385427 9 0.16612583216221677 0.9367138091578026 >10 0.8434959897042558 9.915136803905561 >50 0.07358905310608677 3.1377115576781667 >100 0.028410963540938847 2.9713862914368634 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TCGCACCACTGTGCGGCGACTGCTGGAGACGCTGCAGGAAGAGGGATATG 427 0.12326184915867291 No Hit GTCTAATGTTATTAAATATGTTAAATAAACTTGATGGCGGTGCCAGCGTC 403 0.116333782695422 No Hit GCCCATAATAAATCCGCTACCGACGCTGACTAACATTTCGCGATCGTTCA 363 0.10478700525667042 No Hit ACCAAAGGCCGTGCAATCGCGCAACGATAAACCTAAATGTTGGGTCAGCA 360 0.10392099694876407 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10-11 0.0 0.0 0.0 0.0 0.0 12-13 0.0 0.0 0.0 0.0 0.0 14-15 0.0 0.0 0.0 0.0 0.0 16-17 0.0 0.0 0.0 0.0 0.0 18-19 0.0 0.0 0.0 0.0 0.0 20-21 0.0 0.0 0.0 1.4433471798439452E-4 0.0 22-23 0.0 0.0 0.0 4.3300415395318355E-4 0.0 24-25 0.0 0.0 0.0 0.0010103430258907617 0.0 26-27 0.0 0.0 0.0 0.0017320166158127344 0.0 28-29 0.0 0.0 0.0 0.0033196985136410744 0.0 30-31 0.0 0.0 0.0 0.0062063928733289645 0.0 32-33 0.0 0.0 0.0 0.011546777438751564 0.0 34-35 0.0 0.0 0.0 0.020928534107737207 0.0 36-37 0.0 0.0 0.0 0.034495997598270295 0.0 38-39 0.0 0.0 0.0 0.059898907963523734 0.0 40-41 0.0 0.0 0.0 0.09251855422799689 0.0 42-43 0.0 0.0 0.0 0.12268451028673535 0.0 44-45 0.0 0.0 0.0 0.1577578467569432 0.0 46-47 0.0 0.0 0.0 0.20120259687024597 0.0 48-49 0.0 0.0 0.0 0.2449360164195175 0.0 50-51 0.0 0.0 0.0 0.2980511926377747 0.0 52-53 0.0 0.0 0.0 0.34972302167618796 0.0 54-55 0.0 0.0 0.0 0.4117869504094776 0.0 56-57 0.0 0.0 0.0 0.48698533847934716 0.0 58-59 0.0 0.0 0.0 0.5652147556268889 0.0 60-61 0.0 0.0 0.0 0.6467638712880719 0.0 62-63 0.0 0.0 0.0 0.7356740575664589 0.0 64-65 0.0 0.0 0.0 0.8338216657958473 0.0 66-67 0.0 0.0 0.0 0.955207163620723 0.0 68-69 0.0 0.0 0.0 1.0881394388843504 0.0 70-71 0.0 0.0 0.0 1.236515528972308 0.0 72-73 0.0 0.0 0.0 1.3783965567509677 0.0 74-75 0.0 0.0 0.0 1.530669684224504 0.0 76-77 0.0 0.0 0.0 1.6957886015986512 0.0 78-79 0.0 0.0 0.0 1.890640470877584 0.0 80-81 0.0 0.0 0.0 2.118977994728896 0.0 82-83 0.0 0.0 0.0 2.3467381797082707 0.0 84-85 0.0 0.0 0.0 2.590952522537866 0.0 86-87 0.0 0.0 0.0 2.8539303787054333 0.0 88-89 0.0 0.0 0.0 3.139280116160581 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AAACCGT 50 4.251051E-7 56.965446 6 GGTATCA 335 0.0 45.384933 1 CCGTGCG 65 2.5718018E-6 43.87657 9 GTATCAA 550 0.0 38.87374 1 GTCTAAT 200 0.0 33.258648 1 TCAACGC 665 0.0 30.695665 4 ATCAACG 670 0.0 30.466593 3 TACCGTT 65 0.005855839 29.213049 5 ACCGTGC 100 4.958852E-5 28.486834 8 CGCAGAG 735 0.0 27.77628 8 CGTTGTC 70 0.008402535 27.130318 8 ACGCAGA 760 0.0 26.85871 7 CTAATGT 245 1.0913936E-11 25.1888 3 CAACGCA 815 0.0 25.046156 5 TCTAATG 235 1.7644197E-10 24.240616 2 GTATAAT 275 1.8189894E-12 24.188107 1 AACGCAG 875 0.0 23.871233 6 GTATTGG 120 1.7044456E-4 23.756178 1 AACCGTG 120 1.7144917E-4 23.735603 7 TAGGACC 120 1.7144917E-4 23.735603 4 >>END_MODULE