##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3224475_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 346417 Sequences flagged as poor quality 0 Sequence length 101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.165693369551725 34.0 33.0 34.0 31.0 34.0 2 33.300421168707075 34.0 34.0 34.0 31.0 34.0 3 33.416884852648685 34.0 34.0 34.0 31.0 34.0 4 36.62719785691811 37.0 37.0 37.0 35.0 37.0 5 36.66513768088748 37.0 37.0 37.0 35.0 37.0 6 36.70323338635229 37.0 37.0 37.0 36.0 37.0 7 36.679845388650094 37.0 37.0 37.0 36.0 37.0 8 36.66406671728004 37.0 37.0 37.0 35.0 37.0 9 38.509484234318755 39.0 39.0 39.0 37.0 39.0 10-11 38.53903676782606 39.0 39.0 39.0 37.5 39.0 12-13 38.54109353755734 39.0 39.0 39.0 37.5 39.0 14-15 40.159472543206604 41.0 40.0 41.0 38.0 41.0 16-17 40.16565728587223 41.0 40.0 41.0 38.0 41.0 18-19 40.16652906756886 41.0 40.0 41.0 38.5 41.0 20-21 40.17870225768366 41.0 40.0 41.0 39.0 41.0 22-23 40.10858156499248 41.0 40.0 41.0 38.0 41.0 24-25 40.08160973624273 41.0 40.0 41.0 38.0 41.0 26-27 40.033996599474044 41.0 40.0 41.0 38.0 41.0 28-29 40.00308010288178 41.0 40.0 41.0 38.0 41.0 30-31 39.941778261459454 41.0 40.0 41.0 38.0 41.0 32-33 39.8971268731038 41.0 40.0 41.0 38.0 41.0 34-35 39.819561395658994 41.0 40.0 41.0 38.0 41.0 36-37 39.73450350300361 41.0 40.0 41.0 37.5 41.0 38-39 39.64756059893135 41.0 40.0 41.0 37.0 41.0 40-41 39.541203231943 41.0 40.0 41.0 37.0 41.0 42-43 39.47096418478308 41.0 40.0 41.0 36.5 41.0 44-45 39.27249817416582 41.0 39.0 41.0 36.0 41.0 46-47 39.07673122277487 41.0 39.0 41.0 35.0 41.0 48-49 39.014316560676875 41.0 39.0 41.0 35.0 41.0 50-51 38.917097024684125 41.0 39.0 41.0 35.0 41.0 52-53 38.74437022432502 40.0 38.5 41.0 35.0 41.0 54-55 38.597990283386785 40.0 38.0 41.0 35.0 41.0 56-57 38.43729522511886 40.0 37.5 41.0 35.0 41.0 58-59 38.218918240155645 40.0 37.0 41.0 35.0 41.0 60-61 38.01955446759253 40.0 36.0 41.0 34.0 41.0 62-63 37.826967210038774 40.0 36.0 41.0 34.0 41.0 64-65 37.593645808375456 39.0 35.0 41.0 34.0 41.0 66-67 37.323506063501505 39.0 35.0 41.0 34.0 41.0 68-69 37.074023503465476 38.5 35.0 41.0 33.5 41.0 70-71 36.78499178735454 37.5 35.0 40.0 33.0 41.0 72-73 36.474120785065395 37.0 35.0 40.0 33.0 41.0 74-75 36.133372496153484 36.5 35.0 39.0 33.0 41.0 76-77 34.19346336929192 34.5 33.0 37.5 30.0 39.0 78-79 35.466465271623505 36.0 35.0 39.0 32.5 39.5 80-81 35.32404154530523 35.5 35.0 37.0 33.0 39.0 82-83 35.036487816706455 35.0 35.0 37.0 33.0 39.0 84-85 34.75851069664595 35.0 35.0 36.5 33.0 38.0 86-87 34.49394804527492 35.0 35.0 36.0 33.0 37.0 88-89 34.27653232953348 35.0 35.0 36.0 32.0 37.0 90-91 34.089654953423185 35.0 35.0 35.5 32.0 36.5 92-93 33.96694157619285 35.0 35.0 35.0 32.0 36.0 94-95 33.83089311436794 35.0 34.5 35.0 32.0 36.0 96-97 33.76494513837369 35.0 34.0 35.0 32.0 36.0 98-99 33.68893270249439 35.0 34.0 35.0 32.0 36.0 100-101 32.914439822526035 34.5 33.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 2.0 14 3.0 15 13.0 16 43.0 17 98.0 18 189.0 19 317.0 20 435.0 21 676.0 22 966.0 23 905.0 24 830.0 25 857.0 26 1000.0 27 1336.0 28 1658.0 29 1909.0 30 2166.0 31 2484.0 32 3127.0 33 4289.0 34 6989.0 35 13280.0 36 33125.0 37 75160.0 38 132329.0 39 62212.0 40 19.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.11396451008487 21.101939241358107 13.648941045438463 23.135155203118565 2 14.681150174500674 21.108375166345763 41.46245709650508 22.748017562648485 3 17.696879772066612 28.37793757234778 30.313466140518507 23.6117165150671 4 11.791569120453095 17.975445777776493 41.24797570558027 28.985009396190144 5 12.425487201840555 39.13000805387726 36.19828126217824 12.246223482103938 6 28.028070215953605 39.58206439060439 19.741814056469515 12.648051336972493 7 25.040918892548575 32.586449279336755 25.166490097195 17.206141730919672 8 24.004884286856594 36.89281992511915 21.911164867774964 17.191130920249297 9 25.313134170667144 16.449827808681444 22.05723160237517 36.179806418276236 10-11 23.90139629406178 26.841061495249946 29.913803306419716 19.343738904268555 12-13 24.419846601061725 24.796271545565027 29.997373108132685 20.78650874524056 14-15 21.995167673641884 26.591795437290894 26.76831679738581 24.644720091681414 16-17 21.42850957083515 29.274111836312883 27.997182586304948 21.300196006547022 18-19 21.48667646218286 28.523571302794032 29.125158407352984 20.86459382767012 20-21 22.308487268087514 27.539237846154734 28.940311131510654 21.211963754247098 22-23 22.12474705048598 27.905274917511758 28.29281811017485 21.677159921827414 24-25 21.82286351833703 27.76816346796414 28.484930712018624 21.924042301680203 26-27 21.73523956611794 28.250398735593198 28.479031198804876 21.53533049948399 28-29 21.65039224601439 27.925895453987774 28.840438507227862 21.583273792769972 30-31 21.771461644936917 27.75042615133027 28.61846140966963 21.85965079406318 32-33 21.861288162209597 27.809916401090018 28.84234561913999 21.48644981756039 34-35 21.987892679603465 27.82908297296205 28.541116968146834 21.641907379287648 36-37 21.74783458401352 27.663919933374036 28.72956007522845 21.858685407383994 38-39 21.78516065897459 27.996172243279055 28.31832733382022 21.900339763926134 40-41 21.867142778789724 27.7414214660366 28.784528472909816 21.60690728226386 42-43 21.989971623794442 27.674738826327804 28.62503860953706 21.71025094034069 44-45 22.01192588112515 27.8296541898643 28.26543529754799 21.892984631462557 46-47 21.97914108657027 27.615814638797005 28.121975529778844 22.28306874485389 48-49 21.885951491567894 27.61334703562789 28.358697974100355 22.142003498703865 50-51 21.86512209273794 27.782123856508196 28.13502224198004 22.21773180877382 52-53 22.1540801981427 27.880560134173553 27.89730296145974 22.068056706224002 54-55 22.046839502680296 27.520589347520474 28.13949661823756 22.293074531561675 56-57 22.201660851904727 27.935396238616466 27.573086288950122 22.289856620528685 58-59 22.33123820497604 27.601691697025093 28.132043623720143 21.935026474278725 60-61 22.216912279587252 27.89981822670696 28.003771182219424 21.879498311486365 62-63 21.91592791346845 27.729441684443895 28.229705816977802 22.124924585109852 64-65 22.281960758276874 27.613252236466458 27.825424271903515 22.279362733353157 66-67 22.016962216057525 27.715585551517393 27.779237162148508 22.488215070276574 68-69 22.16028659101603 27.67315114442998 28.12636215890098 22.040200105653014 70-71 22.378809354044403 27.29586019161877 28.05390613047281 22.271424323864014 72-73 21.92415499239356 27.620757641801642 27.971346671785742 22.48374069401906 74-75 22.157544231374327 27.510052913107614 27.877962109249832 22.454440746268226 76-77 21.95444770001299 27.308719310653405 28.167082834172884 22.56975015516072 78-79 22.142510710532697 27.308249708419456 27.637360416642608 22.91187916440523 80-81 21.84352856777874 27.866412814254225 27.60717157122422 22.682887046742813 82-83 21.921458139682574 27.83331505077739 27.797375394758873 22.44785141478116 84-85 22.095525671207053 27.474419725786962 27.97411733800603 22.45593726499995 86-87 21.482923759515266 28.04827707647142 28.002811640306334 22.465987523706975 88-89 22.14715213167945 27.20478498457062 27.73781309808699 22.910249785662945 90-91 21.99372432646204 27.581209929073918 27.66665608212068 22.75840966234336 92-93 22.12579059341776 27.425761437804724 28.037018968468637 22.41142900030888 94-95 21.980156862971505 27.36008914112183 27.74705052003799 22.91270347586868 96-97 22.07974781838074 27.61772661272397 27.9273245828005 22.375200986094793 98-99 21.361971265844343 27.69855405479523 27.984336796404335 22.955137882956087 100-101 21.62939403262312 27.59835974411084 27.784253485688204 22.987992737577834 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 3.0 1 2.0 2 1.0 3 2.0 4 4.0 5 3.5 6 5.5 7 10.5 8 19.5 9 28.0 10 26.5 11 27.5 12 28.5 13 32.0 14 38.5 15 45.0 16 49.0 17 52.0 18 59.5 19 74.5 20 92.0 21 115.5 22 125.0 23 155.5 24 207.5 25 256.0 26 383.0 27 556.5 28 823.5 29 1444.5 30 2466.0 31 3966.5 32 6222.0 33 9005.5 34 11979.0 35 14670.5 36 17318.5 37 19071.0 38 18752.0 39 17635.0 40 15759.5 41 13628.5 42 11995.0 43 10806.5 44 10027.0 45 9589.5 46 9502.5 47 9492.0 48 9571.0 49 9900.5 50 10648.5 51 10481.5 52 9817.0 53 10141.5 54 10462.0 55 9887.0 56 8455.5 57 7255.0 58 6732.5 59 6342.0 60 5333.0 61 3997.0 62 3206.5 63 2321.0 64 1455.0 65 975.5 66 757.5 67 659.5 68 507.0 69 320.5 70 193.0 71 126.0 72 96.0 73 72.0 74 47.0 75 33.0 76 25.0 77 17.0 78 9.0 79 3.0 80 3.5 81 4.0 82 2.5 83 1.5 84 0.5 85 0.5 86 0.5 87 0.5 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.4742838832967204 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0011546777438751561 22-23 0.0011546777438751561 24-25 1.4433471798439452E-4 26-27 0.002742359641703496 28-29 0.004185706821547442 30-31 7.216735899219726E-4 32-33 2.8866943596878903E-4 34-35 0.004330041539531836 36-37 0.00158768189782834 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.007938409489141698 46-47 0.08140478094319852 48-49 8.660083079063672E-4 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.008227078925110489 58-59 0.03969204744570849 60-61 0.030743294930676034 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 5.773388719375781E-4 78-79 0.008371413643094884 80-81 0.0062063928733289645 82-83 8.660083079063672E-4 84-85 0.002165020769765918 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.07260036314615045 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 346417.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 61.19113312775012 #Duplication Level Percentage of deduplicated Percentage of total 1 78.9906842526171 48.33529475953967 2 12.326947872943194 15.085998167042062 3 3.786948487066498 6.95183007060054 4 1.6280681180115706 3.9849333180116644 5 0.8798185960082194 2.6918548418304584 6 0.5681018452264052 2.085767738482167 7 0.3463388041498606 1.4835004710427926 8 0.25158720602875856 1.2315924973875572 9 0.18828795602401743 1.036939804507585 >10 0.9210481388362293 10.546564637040516 >50 0.07856543473688117 3.262444418804765 >100 0.03360328835130334 3.303279275710236 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTCTAATGTTATTAAATATGTTAAATAAACTTGATGGCGGTGCCAGCGTC 393 0.11344708833573411 No Hit TCGCACCACTGTGCGGCGACTGCTGGAGACGCTGCAGGAAGAGGGATATG 351 0.10132297202504496 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 2.8866943596878903E-4 0.0 5 0.0 0.0 0.0 2.8866943596878903E-4 0.0 6 0.0 0.0 0.0 2.8866943596878903E-4 0.0 7 0.0 0.0 0.0 2.8866943596878903E-4 0.0 8 0.0 0.0 0.0 2.8866943596878903E-4 0.0 9 0.0 0.0 0.0 2.8866943596878903E-4 0.0 10-11 0.0 0.0 0.0 2.8866943596878903E-4 0.0 12-13 0.0 0.0 0.0 2.8866943596878903E-4 0.0 14-15 0.0 0.0 0.0 2.8866943596878903E-4 0.0 16-17 0.0 0.0 0.0 2.8866943596878903E-4 0.0 18-19 0.0 0.0 0.0 2.8866943596878903E-4 0.0 20-21 0.0 0.0 0.0 4.3300415395318355E-4 0.0 22-23 0.0 0.0 0.0 7.216735899219726E-4 0.0 24-25 0.0 0.0 0.0 0.0011546777438751561 0.0 26-27 0.0 0.0 0.0 0.0017320166158127344 0.0 28-29 0.0 0.0 0.0 0.0033196985136410744 0.0 30-31 0.0 0.0 0.0 0.0062063928733289645 0.0 32-33 0.0 0.0 0.0 0.011402442720767167 0.0 34-35 0.0 0.0 0.0 0.02063986467176842 0.0 36-37 0.0 0.0 0.0 0.033629989290363926 0.0 38-39 0.0 0.0 0.0 0.059032899655617366 0.0 40-41 0.0 0.0 0.0 0.09222988479202811 0.0 42-43 0.0 0.0 0.0 0.12254017556875096 0.0 44-45 0.0 0.0 0.0 0.1581908509108964 0.0 46-47 0.0 0.0 0.0 0.20163560102419917 0.0 48-49 0.0 0.0 0.0 0.24580202472742388 0.0 50-51 0.0 0.0 0.0 0.299638874535603 0.0 52-53 0.0 0.0 0.0 0.3514550382920007 0.0 54-55 0.0 0.0 0.0 0.41279729343536836 0.0 56-57 0.0 0.0 0.0 0.48929469396709746 0.0 58-59 0.0 0.0 0.0 0.5683901194225457 0.0 60-61 0.0 0.0 0.0 0.651526916981557 0.0 62-63 0.0 0.0 0.0 0.7423134545937411 0.0 64-65 0.0 0.0 0.0 0.8421930794389421 0.0 66-67 0.0 0.0 0.0 0.9651662591616463 0.0 68-69 0.0 0.0 0.0 1.0991088774511644 0.0 70-71 0.0 0.0 0.0 1.2493613188729191 0.0 72-73 0.0 0.0 0.0 1.3941290410112668 2.8866943596878903E-4 74-75 0.0 0.0 0.0 1.549000193408522 2.8866943596878903E-4 76-77 0.0 0.0 0.0 1.7144077802186382 2.8866943596878903E-4 78-79 0.0 0.0 0.0 1.9105586619594304 2.8866943596878903E-4 80-81 0.0 0.0 0.0 2.140483867708571 2.8866943596878903E-4 82-83 0.0 0.0 0.0 2.3722854247915084 2.8866943596878903E-4 84-85 0.0 0.0 0.0 2.6180874495189324 2.8866943596878903E-4 86-87 0.0 0.0 0.0 2.88207564871239 2.8866943596878903E-4 88-89 0.0 0.0 0.0 3.169301737501335 2.8866943596878903E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAGACCG 25 0.0050240904 56.98346 5 TACGTCG 25 0.0050240904 56.98346 5 GTATCAA 550 0.0 49.455692 1 GGTATCA 235 0.0 46.70508 1 ATCAACG 605 0.0 43.16929 3 TCAACGC 640 0.0 40.808468 4 TCGCACA 60 8.292923E-5 39.571846 9 CAACGCA 695 0.0 37.579018 5 AACGCAG 755 0.0 35.221565 6 CCCCTAT 85 1.5780997E-5 33.684994 1 CCGTGCG 85 1.6321654E-5 33.51968 9 GTACATG 1250 0.0 33.213406 1 TATCAAC 805 0.0 32.443996 2 CGCAGAG 835 0.0 31.847042 8 ACATGGG 1240 0.0 31.78513 3 TACATGG 1285 0.0 31.041573 2 GTCTAAT 235 0.0 30.459835 1 ACGCAGA 860 0.0 30.369091 7 AAACCGT 95 3.490789E-5 29.991293 6 GTATTAC 80 4.3671622E-4 29.825258 1 >>END_MODULE