##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3224474_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 829382 Sequences flagged as poor quality 0 Sequence length 101 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.183067633490964 34.0 33.0 34.0 31.0 34.0 2 33.31400006269728 34.0 34.0 34.0 31.0 34.0 3 33.431520095685705 34.0 34.0 34.0 31.0 34.0 4 36.6383970233258 37.0 37.0 37.0 35.0 37.0 5 36.66496740946874 37.0 37.0 37.0 35.0 37.0 6 36.70366610319491 37.0 37.0 37.0 36.0 37.0 7 36.681480909882296 37.0 37.0 37.0 36.0 37.0 8 36.6682288740291 37.0 37.0 37.0 36.0 37.0 9 38.513666802510784 39.0 39.0 39.0 37.0 39.0 10-11 38.540433720529265 39.0 39.0 39.0 37.5 39.0 12-13 38.53475358761102 39.0 39.0 39.0 37.0 39.0 14-15 40.159098581835636 41.0 40.0 41.0 38.0 41.0 16-17 40.16714794871362 41.0 40.0 41.0 38.0 41.0 18-19 40.153598100754536 41.0 40.0 41.0 38.0 41.0 20-21 40.15485807504865 41.0 40.0 41.0 38.5 41.0 22-23 40.08561495185572 41.0 40.0 41.0 38.0 41.0 24-25 40.05416502890104 41.0 40.0 41.0 38.0 41.0 26-27 39.99846753365759 41.0 40.0 41.0 38.0 41.0 28-29 39.97155773817131 41.0 40.0 41.0 38.0 41.0 30-31 39.92154459585571 41.0 40.0 41.0 38.0 41.0 32-33 39.88912105640103 41.0 40.0 41.0 38.0 41.0 34-35 39.824002088301896 41.0 40.0 41.0 38.0 41.0 36-37 39.72799807567562 41.0 40.0 41.0 37.0 41.0 38-39 39.63495409835275 41.0 40.0 41.0 37.0 41.0 40-41 39.51404057478942 41.0 40.0 41.0 36.5 41.0 42-43 39.43391525256155 41.0 39.0 41.0 36.0 41.0 44-45 39.2148708315348 41.0 39.0 41.0 35.0 41.0 46-47 39.016881846965575 41.0 39.0 41.0 35.0 41.0 48-49 38.93703142822005 41.0 39.0 41.0 35.0 41.0 50-51 38.80175660913788 40.0 38.0 41.0 35.0 41.0 52-53 38.583260789358825 40.0 37.5 41.0 35.0 41.0 54-55 38.40258590130965 40.0 37.0 41.0 35.0 41.0 56-57 38.18316167941913 40.0 36.5 41.0 35.0 41.0 58-59 37.93510589812656 40.0 36.0 41.0 34.0 41.0 60-61 37.69098135720331 39.0 35.0 41.0 34.0 41.0 62-63 37.47322403910381 39.0 35.0 41.0 34.0 41.0 64-65 37.218331842263275 38.5 35.0 41.0 34.0 41.0 66-67 36.93972198576772 37.5 35.0 41.0 33.0 41.0 68-69 36.677790210060024 37.0 35.0 40.0 33.0 41.0 70-71 36.37534754793328 37.0 35.0 40.0 33.0 41.0 72-73 36.061453588334444 36.0 35.0 39.0 33.0 41.0 74-75 35.73954884480251 36.0 35.0 39.0 33.0 41.0 76-77 33.88780200197255 34.5 32.5 36.5 29.5 39.0 78-79 35.14160543633693 35.0 35.0 37.0 32.5 39.0 80-81 35.02980532492869 35.0 35.0 37.0 33.0 39.0 82-83 34.797073001343165 35.0 35.0 36.5 33.0 38.0 84-85 34.57066285499323 35.0 35.0 36.0 33.0 37.0 86-87 34.35816366885223 35.0 35.0 36.0 33.0 37.0 88-89 34.19546783026398 35.0 35.0 35.0 32.5 36.5 90-91 34.04814367806391 35.0 35.0 35.0 32.0 36.0 92-93 33.94666631298967 35.0 35.0 35.0 32.0 36.0 94-95 33.845190153632466 35.0 34.5 35.0 32.0 36.0 96-97 33.79471883884627 35.0 34.0 35.0 32.0 35.5 98-99 33.755776590280476 35.0 34.0 35.0 32.0 35.0 100-101 32.946618084308554 34.5 33.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 4.0 14 17.0 15 30.0 16 78.0 17 165.0 18 257.0 19 450.0 20 638.0 21 940.0 22 1351.0 23 1407.0 24 1501.0 25 1911.0 26 2509.0 27 3539.0 28 4628.0 29 5380.0 30 5721.0 31 6415.0 32 7833.0 33 10637.0 34 18263.0 35 36162.0 36 98818.0 37 217076.0 38 294976.0 39 108665.0 40 11.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.955012144964236 19.534554089006537 13.519616691602712 23.99081707442652 2 15.646228155421749 20.364560600543538 39.385952432051816 24.603258811982897 3 19.229257447111223 26.552782674328597 28.760691695744544 25.45726818281564 4 12.956635181376013 17.27515186005966 39.213776040473505 30.554436918090822 5 13.761210154066521 37.774752767723434 35.011490483275495 13.452546594934542 6 29.74298935834151 37.095572365930295 19.5285164134259 13.632921862302291 7 27.09439076324299 30.9025274240338 23.19474018003767 18.80834163268554 8 25.53431350089585 34.67545714761111 20.89592009472113 18.89430925677191 9 26.259793436558788 16.162033899939956 20.631868065619944 36.946304597881316 10-11 25.656332064115205 25.360268247924356 28.257485694167467 20.725913993792968 12-13 26.280592055289357 23.119804866756212 28.121782242681903 22.477820835272528 14-15 23.36902657641473 25.197074448203605 25.35604823832685 26.07785073705482 16-17 23.170987554588837 27.750963970763777 26.38711715470073 22.690931319946657 18-19 22.918570694806494 27.25499227135385 27.36205994342776 22.464377090411897 20-21 24.027370007535794 26.069570459683494 26.906525998492842 22.996533534287867 22-23 24.09481155308568 26.358815078646902 26.33349470050514 23.212878667762276 24-25 23.809684571988026 26.19887602923144 26.4348954220075 23.55654397677304 26-27 23.420217335604153 27.109677613829895 26.71612232286847 22.753982727697476 28-29 23.260852920447988 26.954044158651865 26.998295654249922 22.78680726665023 30-31 23.491896030456576 26.28248294654726 26.902888009380526 23.322733013615636 32-33 23.323538880201017 26.55552755609304 27.155975359937113 22.964958203768834 34-35 23.879460544640114 26.213262113329034 26.633950479589565 23.273326862441294 36-37 23.07006427793727 26.347684438855172 27.03441299207709 23.547838291130464 38-39 23.257738894743316 26.555133822532923 26.561102121820824 23.626025160902937 40-41 23.452944481553736 26.43685298209992 26.976712781323926 23.133489755022417 42-43 23.47030680675491 26.476038785505352 26.98328393912576 23.07037046861398 44-45 23.649959996358373 26.123734549460114 26.77856431843984 23.44774113574167 46-47 23.541670311874974 25.88536327693467 26.73668282222988 23.83628358896048 48-49 23.201539470638167 25.9836913534995 27.041353981788717 23.773415194073618 50-51 23.400314933287678 26.29813523804471 26.76637544581387 23.53517438285374 52-53 23.50876917994362 26.47694307327625 26.36113395275036 23.653153794029773 54-55 23.629521740283728 25.86841768931566 26.70964645965309 23.79241411074752 56-57 23.698681755288202 26.07646603100724 26.465819991619664 23.759032222084894 58-59 23.949654583887416 26.095968687901237 26.625355442376875 23.32902128583447 60-61 23.536708398183922 26.544609868304814 26.522599362358655 23.39608237115261 62-63 23.325198762452043 26.240803393370005 26.850112493398697 23.583885350779255 64-65 23.665391821862546 26.032817206064273 26.44836757971598 23.8534233923572 66-67 23.33978793848914 26.258286290273965 26.39320602569142 24.008719745545477 68-69 23.49592829359692 26.312061269716487 26.73828223906475 23.453728197621842 70-71 23.92347555167583 25.98699995900562 26.663768926743042 23.42575556257551 72-73 23.323450472761646 26.25925086389625 26.797362373429856 23.619936289912246 74-75 23.550064988147803 25.94142385535254 26.72532078101526 23.7831903754844 76-77 23.50277949090795 25.51494884422492 26.674974092046032 24.307297572821092 78-79 23.492662951568064 25.488578875305446 26.638800412627962 24.37995776049853 80-81 23.104957586500028 26.17687665418679 26.628985874224533 24.089179885088654 82-83 23.093576054696708 26.270853843292556 26.908986120246187 23.72658398176455 84-85 23.44303794415838 25.822211852824484 26.84998797270437 23.884762230312763 86-87 23.025819224434578 26.483875946186437 26.75232884243931 23.737975986939674 88-89 23.459334781801388 25.8260970216378 26.178226679624107 24.53634151693671 90-91 23.402304366383646 26.059825267488325 26.18865613191509 24.349214234212944 92-93 23.434617582730276 26.022689183030256 26.732856512439383 23.80983672180009 94-95 23.43859644892221 25.77183975538413 26.448307293864588 24.341256501829072 96-97 23.576229047652348 26.173464097364064 26.57508843934399 23.675218415639595 98-99 22.45135534651102 26.318270712409962 26.880556848352143 24.349817092726873 100-101 23.091345744902263 26.01404279680776 26.432768858508478 24.461842599781498 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2.0 1 1.0 2 1.0 3 3.0 4 3.0 5 2.0 6 3.5 7 4.5 8 8.5 9 15.5 10 16.5 11 15.0 12 14.5 13 16.0 14 25.5 15 30.5 16 32.0 17 38.0 18 44.0 19 51.5 20 58.0 21 67.5 22 84.0 23 124.0 24 155.0 25 206.5 26 296.0 27 370.0 28 488.5 29 724.5 30 1149.5 31 2059.0 32 3843.0 33 7160.0 34 12067.0 35 18339.5 36 25924.5 37 31691.0 38 34358.0 39 35338.5 40 34239.0 41 31866.0 42 29644.0 43 28094.5 44 27086.5 45 26930.0 46 27284.0 47 27902.0 48 29035.5 49 31726.0 50 34662.5 51 34086.0 52 32017.0 53 32102.5 54 33817.0 55 33404.0 56 28486.5 57 24367.0 58 23154.0 59 21742.5 60 17854.0 61 13046.5 62 10269.0 63 7247.0 64 4223.5 65 2637.5 66 2050.5 67 1742.5 68 1288.0 69 832.0 70 500.5 71 335.5 72 234.5 73 179.5 74 157.0 75 116.0 76 66.5 77 46.5 78 27.5 79 15.5 80 9.5 81 6.0 82 7.0 83 6.0 84 3.0 85 1.0 86 0.0 87 0.5 88 1.0 89 0.5 90 0.0 91 0.5 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.47469079386820545 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 8.440019195015083E-4 22-23 0.0012660028792522626 24-25 1.2057170278592976E-4 26-27 0.00235114820432563 28-29 0.0037980086377567878 30-31 5.42572662536684E-4 32-33 1.2057170278592976E-4 34-35 0.003255435975220104 36-37 0.0018085755417889464 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.009947165479839206 46-47 0.08060218331239405 48-49 7.234302167155786E-4 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.007174016315762821 58-59 0.037316942012245266 60-61 0.028032920897728672 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 4.2200095975075414E-4 78-79 0.00765630312690654 80-81 0.0056668700309387 82-83 0.001024859473680403 84-85 0.0022305765015397006 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.06733929600594177 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 829382.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 51.372875955921685 #Duplication Level Percentage of deduplicated Percentage of total 1 73.18847510649171 37.5990245304886 2 15.25727720596233 15.676204186540282 3 5.2606364613717185 8.107620731377441 4 2.3311920600640867 4.790401621244075 5 1.1888118242180612 3.0536341190243714 6 0.7146146001152928 2.2027084324808106 7 0.4394340309290838 1.5802492973211333 8 0.2731651494555166 1.122662347076725 9 0.21297024778328252 0.9846804709505229 >10 0.9333295074626627 8.639879185997486 >50 0.09769912508242155 3.530842794060385 >100 0.09394007437422411 9.531414928702443 >500 0.007045505574705287 2.3928374607014873 >1k 0.0014091011149410576 0.7878398940342214 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TCGCACCACTGTGCGGCGACTGCTGGAGACGCTGCAGGAAGAGGGATATG 1230 0.1483031944266936 No Hit GTACATGGGGGGAATTCGTGGAGAAAGAAATGGCTCGTCTGGCAGCATTT 1139 0.137331169473174 No Hit GAACAAGACCGCAAGGAATTAATCGAAATGTTAGCCTCCCGCCCCGGTGA 1077 0.12985572390044636 No Hit ACCAAAGGCCGTGCAATCGCGCAACGATAAACCTAAATGTTGGGTCAGCA 1061 0.12792657665587148 No Hit GTCTTGTTCCGGGCAAAAGGCCAGCCAGGTCAGGCCCGAGGCGGTTTTCA 1022 0.12322428024722021 No Hit CTTTATTGGTGCCCGACCATCATTTAGGTGAGAAAACCCTCTCTACTTTG 1001 0.1206922744887157 No Hit TCATTTAGGTGAGAAAACCCTCTCTACTTTGGCGCGACTGCGTGAACGCG 952 0.11478426105220514 No Hit GCATATTCTCGGGGCGCTATCGCTGGATGCGTATTTGATTACCGGCAACG 945 0.11394025913270363 No Hit GTATCAGCAATGGGATACCCGAGCCAGCATGCATATCTTCAATGACGACG 902 0.10875567591290866 No Hit GAGTACATGGGGGGAATTCGTGGAGAAAGAAATGGCTCGTCTGGCAGCAT 869 0.10477680972097296 No Hit ATATACACCAGATTCAGACAGCCAATCACCCGTTGTTCACTGCGCAGCGG 854 0.10296823417918402 No Hit GTATCAACGCAGAGTACATGGGGGGAATTCGTGGAGAAAGAAATGGCTCG 847 0.10212423225968251 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.2057170278592976E-4 2 0.0 0.0 0.0 0.0 1.2057170278592976E-4 3 0.0 0.0 0.0 0.0 1.2057170278592976E-4 4 0.0 0.0 0.0 0.0 1.2057170278592976E-4 5 0.0 0.0 0.0 0.0 1.2057170278592976E-4 6 0.0 0.0 0.0 0.0 2.4114340557185952E-4 7 0.0 0.0 0.0 0.0 2.4114340557185952E-4 8 0.0 0.0 0.0 0.0 2.4114340557185952E-4 9 0.0 0.0 0.0 0.0 2.4114340557185952E-4 10-11 0.0 0.0 0.0 0.0 2.4114340557185952E-4 12-13 0.0 0.0 0.0 0.0 6.631443653226137E-4 14-15 0.0 0.0 0.0 0.0 7.837160681085435E-4 16-17 0.0 0.0 0.0 0.0 8.440019195015084E-4 18-19 0.0 0.0 0.0 0.0 8.440019195015084E-4 20-21 0.0 0.0 0.0 1.2057170278592976E-4 9.042877708944732E-4 22-23 0.0 0.0 0.0 2.4114340557185952E-4 9.645736222874381E-4 24-25 0.0 0.0 0.0 3.014292569648244E-4 9.645736222874381E-4 26-27 0.0 0.0 0.0 6.028585139296488E-4 9.645736222874381E-4 28-29 0.0 0.0 0.0 0.0016880038390030168 9.645736222874381E-4 30-31 0.0 0.0 0.0 0.005003725665616085 9.645736222874381E-4 32-33 0.0 0.0 0.0 0.013323173157845238 9.645736222874381E-4 34-35 0.0 0.0 0.0 0.025259771733652285 9.645736222874381E-4 36-37 0.0 0.0 0.0 0.04587753291004627 9.645736222874381E-4 38-39 0.0 0.0 0.0 0.07662331712045836 9.645736222874381E-4 40-41 0.0 0.0 0.0 0.11598997808006443 9.645736222874381E-4 42-43 0.0 0.0 0.0 0.15867236086628356 9.645736222874381E-4 44-45 0.0 0.0 0.0 0.2092521901849811 9.645736222874381E-4 46-47 0.0 0.0 0.0 0.26821175284730076 0.0011454311764663328 48-49 0.0 0.0 0.0 0.33036646563344757 0.0013262887306452274 50-51 0.0 0.0 0.0 0.39372689544745365 0.0014468604334311572 52-53 0.0 0.0 0.0 0.4653464869022959 0.001567432136217087 54-55 0.0 0.0 0.0 0.5352780745181351 0.001567432136217087 56-57 0.0 0.0 0.0 0.6213662703072891 0.001567432136217087 58-59 0.0 0.0 0.0 0.7173413457248892 0.001567432136217087 60-61 0.0 0.0 0.0 0.8244693036501878 0.001567432136217087 62-63 0.0 0.0 0.0 0.9390727071482139 0.001567432136217087 64-65 0.0 0.0 0.0 1.055665543742208 0.0016880038390030168 66-67 0.0 0.0 0.0 1.1881135592525518 0.0016880038390030168 68-69 0.0 0.0 0.0 1.344133342657545 0.0016880038390030168 70-71 0.0 0.0 0.0 1.5082917160005884 0.0018085755417889464 72-73 0.0 0.0 0.0 1.6912592749782367 0.002110004798753771 74-75 0.0 0.0 0.0 1.8739856905503134 0.0022908623529326656 76-77 0.0 0.0 0.0 2.0805853032740043 0.0022908623529326656 78-79 0.0 0.0 0.0 2.310997827297916 0.0022908623529326656 80-81 0.0 0.0 0.0 2.5593755350369314 0.00235114820432563 82-83 0.0 0.0 0.0 2.8268035718161233 0.002411434055718595 84-85 0.0 0.0 0.0 3.1048419184404774 0.002411434055718595 86-87 0.0 0.0 0.0 3.4038597413495832 0.002532005758504525 88-89 0.0 0.0 0.0 3.742364796921081 0.0026525774612904548 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 520 0.0 52.317436 1 GTATCAA 1045 0.0 47.04309 1 AATGCGG 155 0.0 42.893612 7 AAATGCG 170 0.0 39.108883 6 CCGTGCG 150 0.0 37.991486 9 ATCAACG 1300 0.0 36.89558 3 TCAACGC 1330 0.0 36.063347 4 ATGCGGG 195 0.0 34.094925 8 ACCGTGC 175 3.6379788E-12 32.564133 8 CGTACAC 95 3.4950248E-5 29.99328 3 CGCAGAG 1735 0.0 27.918816 8 AAACCGT 205 3.092282E-11 27.798649 6 TATCAAC 1830 0.0 26.988487 2 ACGCAGA 1790 0.0 26.795671 7 CAACGCA 1795 0.0 26.721033 5 AACGCAG 1870 0.0 25.649334 6 GTACATG 3205 0.0 25.018208 1 ACATGGG 3280 0.0 24.034248 3 AACCGTG 260 2.3646862E-11 23.744678 7 TACATGG 3385 0.0 23.709606 2 >>END_MODULE