Basic Statistics
Measure | Value |
---|---|
Filename | SRR2031852_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 534190 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 51 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTTATACACATCTCCGAGCCCACGAGACTAAGGCGAATCTCGTATGCCGT | 5498 | 1.02922181246373 | No Hit |
ATACACATCTCCGAGCCCACGAGACTAAGGCGAATCTCGTATGCCGTCTT | 1895 | 0.35474269454688406 | RNA PCR Primer, Index 46 (95% over 21bp) |
ACACATCTCCGAGCCCACGAGACTAAGGCGAATCTCGTATGCCGTCTTCT | 1627 | 0.3045732791703326 | RNA PCR Primer, Index 46 (95% over 23bp) |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 876 | 0.1639865965293248 | No Hit |
TCTCTATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTGCCTGTC | 865 | 0.1619274041071529 | No Hit |
CCATAGAGAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCT | 762 | 0.14264587506317977 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 678 | 0.12692113293023083 | No Hit |
GTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGGCCAT | 577 | 0.10801400250847076 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 725 | 0.0 | 41.34863 | 1 |
GTATTAC | 60 | 8.1992344E-5 | 39.65312 | 1 |
GTATCAA | 980 | 0.0 | 34.95948 | 1 |
TAGCGCA | 70 | 2.0520917E-4 | 33.927937 | 9 |
TCAACGC | 1185 | 0.0 | 29.661894 | 4 |
ATCTTAT | 85 | 6.3370366E-4 | 27.990435 | 1 |
CAACGCA | 1275 | 0.0 | 27.568113 | 5 |
ATCAACG | 1275 | 0.0 | 27.568113 | 3 |
TATCAAC | 1260 | 0.0 | 27.519327 | 2 |
AACGCAG | 1315 | 0.0 | 26.729538 | 6 |
TATATAC | 90 | 8.9422276E-4 | 26.388397 | 5 |
TACTGAC | 180 | 6.682967E-9 | 26.388397 | 7 |
CGCAGAG | 1465 | 0.0 | 24.31695 | 8 |
ACGCAGA | 1460 | 0.0 | 24.074892 | 7 |
TTATATA | 140 | 1.777426E-5 | 23.749556 | 4 |
TATTAAG | 100 | 0.0016526709 | 23.749556 | 2 |
GTACATG | 1165 | 0.0 | 23.281315 | 1 |
TAATACT | 165 | 2.4262317E-6 | 23.029873 | 4 |
GGCTAGT | 105 | 0.0021949324 | 22.618624 | 7 |
CATGGGG | 905 | 0.0 | 22.568638 | 4 |