Basic Statistics
Measure | Value |
---|---|
Filename | SRR2031831_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1547478 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5215 | 0.3369999444257043 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4329 | 0.2797454955740889 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2442 | 0.15780515134948606 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 2300 | 0.0 | 54.315216 | 1 |
GTATCAA | 4270 | 0.0 | 41.826694 | 1 |
TCAACGC | 4965 | 0.0 | 35.206448 | 4 |
ATCAACG | 5055 | 0.0 | 34.485657 | 3 |
CAACGCA | 5090 | 0.0 | 34.43517 | 5 |
AACGCAG | 5315 | 0.0 | 33.156162 | 6 |
TATCAAC | 5360 | 0.0 | 32.611942 | 2 |
ACGCAGA | 5965 | 0.0 | 29.622799 | 7 |
CGCAGAG | 6055 | 0.0 | 29.025599 | 8 |
ACGACGT | 70 | 0.008392452 | 27.142859 | 8 |
GCAGAGT | 6800 | 0.0 | 25.147058 | 9 |
GTACATG | 3715 | 0.0 | 24.293404 | 1 |
TACATGG | 3715 | 0.0 | 22.375504 | 2 |
AGAGTAC | 6015 | 0.0 | 22.111387 | 10-11 |
CAGAGTA | 6435 | 0.0 | 22.033798 | 10-11 |
GAGTACT | 4590 | 0.0 | 21.887257 | 12-13 |
ACATGGG | 3775 | 0.0 | 21.013247 | 3 |
TACACCG | 190 | 8.254285E-6 | 20.0 | 5 |
AGTACTT | 5000 | 0.0 | 19.3325 | 12-13 |
CGCCGTA | 225 | 0.0 | 19.0 | 94-95 |