Basic Statistics
Measure | Value |
---|---|
Filename | SRR2031828_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1119389 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3922 | 0.350369710618918 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3604 | 0.3219613557038706 | No Hit |
CTTATACACATCTCCGAGCCCACGAGACGCTACGCTATCTCGTATGCCGT | 2995 | 0.26755667600807226 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2141 | 0.19126505620476886 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 1830 | 0.0 | 60.317223 | 1 |
GTATCAA | 3235 | 0.0 | 38.09166 | 1 |
ATCAACG | 3755 | 0.0 | 32.129936 | 3 |
TCAACGC | 3755 | 0.0 | 32.129936 | 4 |
CAACGCA | 3810 | 0.0 | 31.666115 | 5 |
AACGCAG | 3935 | 0.0 | 30.660202 | 6 |
TATCAAC | 4020 | 0.0 | 30.011917 | 2 |
TAGTACG | 85 | 6.407726E-4 | 27.940691 | 4 |
ACGCAGA | 4385 | 0.0 | 27.513777 | 7 |
CGCAGAG | 4395 | 0.0 | 27.235022 | 8 |
GCAGAGT | 5000 | 0.0 | 23.654589 | 9 |
CAGAGTA | 4830 | 0.0 | 22.618654 | 10-11 |
GTACATG | 2125 | 0.0 | 22.613451 | 1 |
GAGTACT | 3810 | 0.0 | 22.440554 | 12-13 |
TGGTATC | 810 | 0.0 | 21.697153 | 2 |
AGAGTAC | 4515 | 0.0 | 21.04061 | 10-11 |
TACATGG | 2170 | 0.0 | 21.01346 | 2 |
GTACTTT | 4395 | 0.0 | 19.34551 | 14-15 |
ACATGGG | 2115 | 0.0 | 19.314085 | 3 |
AGTACTT | 4130 | 0.0 | 19.264193 | 12-13 |