Basic Statistics
Measure | Value |
---|---|
Filename | SRR2031816_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 42170 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 478 | 1.1335072326298317 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 460 | 1.0908228598529761 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 233 | 0.5525254920559639 | No Hit |
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 63 | 0.14939530471899454 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 43 | 0.10196822385582166 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CAAGATC | 20 | 0.0020601999 | 71.25 | 4 |
GGTATCA | 400 | 0.0 | 38.000004 | 1 |
GTATCAA | 580 | 0.0 | 35.215515 | 1 |
AACGCAG | 600 | 0.0 | 33.25 | 6 |
ATCAACG | 630 | 0.0 | 32.42063 | 3 |
TCAACGC | 630 | 0.0 | 32.42063 | 4 |
TATCAAC | 650 | 0.0 | 31.423079 | 2 |
CAACGCA | 635 | 0.0 | 31.41732 | 5 |
ACGCAGA | 685 | 0.0 | 29.124086 | 7 |
CGCAGAG | 685 | 0.0 | 28.430656 | 8 |
ATGGGGC | 70 | 0.008301776 | 27.142859 | 7 |
GCAGAGT | 700 | 0.0 | 25.107141 | 9 |
GAGTACT | 380 | 0.0 | 24.375 | 12-13 |
CAGAGTA | 670 | 0.0 | 23.041046 | 10-11 |
GTACTTT | 405 | 0.0 | 22.870369 | 14-15 |
TTGGTTT | 55 | 0.0028555435 | 21.59091 | 54-55 |
ACTTTTT | 465 | 0.0 | 20.430109 | 16-17 |
AGTACTT | 375 | 0.0 | 20.266666 | 12-13 |
GTACATG | 375 | 0.0 | 19.0 | 1 |
TACATGG | 375 | 7.2759576E-12 | 19.0 | 2 |