Basic Statistics
Measure | Value |
---|---|
Filename | SRR2031786_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3130697 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 12720 | 0.4062993001239021 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 10745 | 0.3432143065905132 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6728 | 0.21490422100893186 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 5165 | 0.0 | 60.69158 | 1 |
GTATCAA | 9720 | 0.0 | 43.848537 | 1 |
TCAACGC | 11905 | 0.0 | 35.38962 | 4 |
ATCAACG | 11950 | 0.0 | 35.17686 | 3 |
CAACGCA | 12120 | 0.0 | 34.644268 | 5 |
TATCAAC | 12450 | 0.0 | 33.91674 | 2 |
AACGCAG | 12525 | 0.0 | 33.82742 | 6 |
ACGCAGA | 13755 | 0.0 | 30.629843 | 7 |
CGCAGAG | 13870 | 0.0 | 30.37588 | 8 |
GCAGAGT | 15500 | 0.0 | 26.691204 | 9 |
GTACATG | 7515 | 0.0 | 25.698658 | 1 |
TACATGG | 7390 | 0.0 | 24.938423 | 2 |
ACATGGG | 7315 | 0.0 | 24.155182 | 3 |
GAGTACT | 12105 | 0.0 | 23.484486 | 12-13 |
AGAGTAC | 14430 | 0.0 | 23.173307 | 10-11 |
CAGAGTA | 15425 | 0.0 | 23.002611 | 10-11 |
AGTACTT | 12965 | 0.0 | 21.047438 | 12-13 |
GTACTTT | 13430 | 0.0 | 21.00836 | 14-15 |
CATGGGG | 4185 | 0.0 | 18.840584 | 4 |
GTATAGG | 1125 | 0.0 | 18.181482 | 1 |