Basic Statistics
Measure | Value |
---|---|
Filename | SRR2031770_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 572229 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1062 | 0.1855900347588116 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 830 | 0.1450468256589582 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 645 | 0.0 | 44.931923 | 1 |
GTATCAA | 1175 | 0.0 | 40.029686 | 1 |
ATCAACG | 1230 | 0.0 | 37.85348 | 3 |
TCAACGC | 1230 | 0.0 | 37.46722 | 4 |
CAACGCA | 1220 | 0.0 | 37.384907 | 5 |
AACGCAG | 1305 | 0.0 | 35.30466 | 6 |
TATCAAC | 1360 | 0.0 | 34.235134 | 2 |
ACGCAGA | 1525 | 0.0 | 30.211529 | 7 |
CGCAGAG | 1565 | 0.0 | 29.441925 | 8 |
GGACCGG | 65 | 0.005843143 | 29.229237 | 6 |
GTACATG | 1055 | 0.0 | 22.96691 | 1 |
GCAGAGT | 1890 | 0.0 | 22.871172 | 9 |
GTATAGT | 230 | 3.608875E-9 | 22.722164 | 1 |
GAGTACT | 1175 | 0.0 | 21.632204 | 12-13 |
TACATGG | 1090 | 0.0 | 20.921825 | 2 |
GTATAGG | 160 | 4.9755916E-5 | 20.785616 | 1 |
GTGGTAT | 345 | 1.8189894E-12 | 20.656515 | 1 |
CATGGGG | 710 | 0.0 | 20.07464 | 4 |
CAGAGTA | 1705 | 0.0 | 20.06111 | 10-11 |
GGGCGCG | 120 | 0.004762066 | 19.790628 | 7 |