Basic Statistics
Measure | Value |
---|---|
Filename | SRR2031746_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 407662 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3127 | 0.7670570227296143 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2488 | 0.610309521122891 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 2263 | 0.5551167388670026 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1569 | 0.3848776682643955 | No Hit |
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1360 | 0.33360970608003687 | No Hit |
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 630 | 0.15453979031648768 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 445 | 0.10915905823942385 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 426 | 0.10449833440448214 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 1270 | 0.0 | 54.600296 | 1 |
CGGTATC | 65 | 2.5871886E-6 | 43.84133 | 2 |
GTATCAA | 2335 | 0.0 | 41.087555 | 1 |
TATCAAC | 2745 | 0.0 | 34.604572 | 2 |
TCAACGC | 2775 | 0.0 | 34.05932 | 4 |
ATCAACG | 2795 | 0.0 | 33.8156 | 3 |
GCGGTAT | 85 | 1.6308502E-5 | 33.525726 | 1 |
CAACGCA | 2845 | 0.0 | 33.221302 | 5 |
AACGCAG | 2945 | 0.0 | 32.41579 | 6 |
GTGGTAT | 480 | 0.0 | 31.663185 | 1 |
ACGCAGA | 3235 | 0.0 | 29.216263 | 7 |
CGCAGAG | 3245 | 0.0 | 28.983425 | 8 |
TGGTATC | 540 | 0.0 | 28.145054 | 2 |
GCAGAGT | 3355 | 0.0 | 27.18366 | 9 |
AGATCGT | 70 | 0.008389812 | 27.139872 | 6 |
ACGTCAA | 35 | 0.008394659 | 27.139872 | 52-53 |
GAGTACT | 2225 | 0.0 | 24.020117 | 12-13 |
GCGTCAG | 100 | 0.0016528742 | 23.747387 | 1 |
CAGAGTA | 3235 | 0.0 | 23.127687 | 10-11 |
AGTACTT | 2245 | 0.0 | 21.69003 | 12-13 |