Basic Statistics
Measure | Value |
---|---|
Filename | SRR2031732_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1921703 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6317 | 0.32871884989511907 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6000 | 0.3122230646463059 | No Hit |
CTTATACACATCTCCGAGCCCACGAGACGCTACGCTATCTCGTATGCCGT | 2987 | 0.1554350490164193 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2706 | 0.14081260215548397 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 4455 | 0.0 | 45.430794 | 1 |
GTATCAA | 7010 | 0.0 | 33.27759 | 1 |
TCAACGC | 8370 | 0.0 | 27.525606 | 4 |
ATCAACG | 8360 | 0.0 | 27.502426 | 3 |
TATCAAC | 8445 | 0.0 | 27.394365 | 2 |
CAACGCA | 8495 | 0.0 | 27.117052 | 5 |
AACGCAG | 8715 | 0.0 | 26.432512 | 6 |
ACGCAGA | 9770 | 0.0 | 23.481005 | 7 |
CGCAGAG | 10090 | 0.0 | 22.642168 | 8 |
GTGGTAT | 2465 | 0.0 | 22.165081 | 1 |
GAGTACT | 6090 | 0.0 | 21.955154 | 12-13 |
GCAGAGT | 10880 | 0.0 | 20.430597 | 9 |
GTACATG | 4985 | 0.0 | 19.823786 | 1 |
TGGTATC | 2665 | 0.0 | 19.785986 | 2 |
CAGAGTA | 10370 | 0.0 | 19.443497 | 10-11 |
AGAGTAC | 8715 | 0.0 | 19.375265 | 10-11 |
GTACTTT | 6850 | 0.0 | 19.172554 | 14-15 |
TACATGG | 5065 | 0.0 | 18.851614 | 2 |
GTACGAC | 155 | 9.622026E-4 | 18.38872 | 3 |
AGTACTT | 6640 | 0.0 | 17.418322 | 12-13 |