Basic Statistics
Measure | Value |
---|---|
Filename | SRR2031729_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3485588 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 10678 | 0.30634716438087345 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 9561 | 0.2743009213940374 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4626 | 0.13271792305917968 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 5730 | 0.0 | 59.039925 | 1 |
GTATCAA | 10075 | 0.0 | 39.190098 | 1 |
TCAACGC | 11840 | 0.0 | 32.940548 | 4 |
ATCAACG | 12075 | 0.0 | 32.221252 | 3 |
CAACGCA | 12170 | 0.0 | 32.04182 | 5 |
TATCAAC | 12320 | 0.0 | 31.773285 | 2 |
AACGCAG | 12695 | 0.0 | 30.64191 | 6 |
GTGGTAT | 2700 | 0.0 | 30.268095 | 1 |
ACGCAGA | 14170 | 0.0 | 27.25118 | 7 |
TGGTATC | 2925 | 0.0 | 27.122906 | 2 |
CGCAGAG | 14500 | 0.0 | 26.4672 | 8 |
GCAGAGT | 16715 | 0.0 | 22.36315 | 9 |
GAGTACT | 10120 | 0.0 | 22.246859 | 12-13 |
CAGAGTA | 15495 | 0.0 | 21.426758 | 10-11 |
GTACATG | 9125 | 0.0 | 20.723858 | 1 |
TACATGG | 8800 | 0.0 | 20.459837 | 2 |
GTACTTT | 11005 | 0.0 | 20.17727 | 14-15 |
ACATGGG | 9235 | 0.0 | 19.084583 | 3 |
AGAGTAC | 14560 | 0.0 | 18.431383 | 10-11 |
TATATCG | 130 | 0.0075690434 | 18.268011 | 5 |