Basic Statistics
Measure | Value |
---|---|
Filename | SRR2031722_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3244817 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 11854 | 0.3653210643312088 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 11398 | 0.3512678835200876 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5050 | 0.15563281380737343 | No Hit |
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3307 | 0.10191637925960077 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 6855 | 0.0 | 62.09433 | 1 |
GTATCAA | 12160 | 0.0 | 41.099216 | 1 |
TGGTATC | 2825 | 0.0 | 33.46463 | 2 |
TCAACGC | 14945 | 0.0 | 33.0574 | 4 |
ATCAACG | 14955 | 0.0 | 33.003532 | 3 |
GTGGTAT | 2980 | 0.0 | 32.999355 | 1 |
TATCAAC | 15185 | 0.0 | 32.692856 | 2 |
CAACGCA | 15295 | 0.0 | 32.36256 | 5 |
AACGCAG | 15865 | 0.0 | 31.405064 | 6 |
ACGCAGA | 18050 | 0.0 | 27.524456 | 7 |
CGCAGAG | 18155 | 0.0 | 27.263144 | 8 |
GAGTACT | 11415 | 0.0 | 24.178806 | 12-13 |
GCAGAGT | 19750 | 0.0 | 24.003132 | 9 |
CAGAGTA | 18775 | 0.0 | 22.809217 | 10-11 |
GTACTTT | 12575 | 0.0 | 21.627459 | 14-15 |
GTACATG | 11305 | 0.0 | 20.044682 | 1 |
TACATGG | 11405 | 0.0 | 19.452389 | 2 |
AGAGTAC | 17800 | 0.0 | 19.09476 | 10-11 |
ACATGGG | 11720 | 0.0 | 18.199104 | 3 |
AGTACTT | 12620 | 0.0 | 18.049446 | 12-13 |