Basic Statistics
Measure | Value |
---|---|
Filename | SRR2031700_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 5391175 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 21004 | 0.3895996698307883 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 20563 | 0.38141963486623975 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 9542 | 0.17699295608100274 | No Hit |
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5711 | 0.10593238023250962 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 11795 | 0.0 | 55.512608 | 1 |
GTATCAA | 19870 | 0.0 | 38.381107 | 1 |
TCAACGC | 24315 | 0.0 | 31.16292 | 4 |
ATCAACG | 24490 | 0.0 | 30.921125 | 3 |
CAACGCA | 24595 | 0.0 | 30.859793 | 5 |
TATCAAC | 24895 | 0.0 | 30.647083 | 2 |
AACGCAG | 25505 | 0.0 | 29.814608 | 6 |
GTGGTAT | 5695 | 0.0 | 26.699099 | 1 |
ACGCAGA | 28665 | 0.0 | 26.445028 | 7 |
CGCAGAG | 29095 | 0.0 | 25.90727 | 8 |
TGGTATC | 5830 | 0.0 | 25.423876 | 2 |
GAGTACT | 19225 | 0.0 | 23.310453 | 12-13 |
GCAGAGT | 31815 | 0.0 | 23.154903 | 9 |
CAGAGTA | 30535 | 0.0 | 21.341814 | 10-11 |
GTACTTT | 20875 | 0.0 | 21.126648 | 14-15 |
GTACATG | 15870 | 0.0 | 19.760927 | 1 |
AGAGTAC | 27630 | 0.0 | 19.391142 | 10-11 |
TACATGG | 15670 | 0.0 | 19.372585 | 2 |
ACATGGG | 15950 | 0.0 | 18.168741 | 3 |
AGTACTT | 20845 | 0.0 | 18.023941 | 12-13 |