Basic Statistics
Measure | Value |
---|---|
Filename | SRR2031691_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 443889 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 973 | 0.21919894388011418 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 839 | 0.189011216768156 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 774 | 0.17436791630340018 | No Hit |
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 481 | 0.10836042343919314 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 690 | 0.0 | 49.57546 | 1 |
GTATCAA | 1140 | 0.0 | 33.75697 | 1 |
ATCAACG | 1180 | 0.0 | 33.41792 | 3 |
TCAACGC | 1170 | 0.0 | 33.297478 | 4 |
CAACGCA | 1190 | 0.0 | 32.737854 | 5 |
AACGCAG | 1220 | 0.0 | 31.925625 | 6 |
TATCAAC | 1275 | 0.0 | 30.55533 | 2 |
CGCCGTA | 120 | 0.0 | 29.686937 | 44-45 |
ACGCAGA | 1405 | 0.0 | 27.383821 | 7 |
GTGGTAT | 330 | 0.0 | 27.354134 | 1 |
CGCAGAG | 1415 | 0.0 | 26.518929 | 8 |
GCCGTAT | 145 | 0.0 | 26.206398 | 46-47 |
CGTATCA | 140 | 0.0 | 25.445946 | 48-49 |
GGATATA | 145 | 2.3264436E-5 | 22.93577 | 1 |
TCGCCGT | 135 | 4.0017767E-11 | 22.869936 | 44-45 |
TAAGGCC | 125 | 2.2497194E-4 | 22.80471 | 4 |
CCGTATC | 160 | 0.0 | 22.2652 | 46-47 |
GGTCGCC | 150 | 7.2759576E-12 | 22.166245 | 42-43 |
GTCGCCG | 140 | 6.548362E-11 | 22.053152 | 42-43 |
CTAAGAC | 195 | 4.2009924E-7 | 21.927607 | 3 |