Basic Statistics
Measure | Value |
---|---|
Filename | SRR2031675_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1565140 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ACCGGGC | 160 | 1.8616665E-6 | 23.747957 | 8 |
GGTATCA | 3250 | 0.0 | 23.390074 | 1 |
GTACATG | 4300 | 0.0 | 22.208672 | 1 |
TACATGG | 4295 | 0.0 | 20.791819 | 2 |
GTATCAA | 4045 | 0.0 | 20.55486 | 1 |
CGTACAC | 195 | 1.0332351E-5 | 19.486748 | 3 |
TATAGTA | 880 | 0.0 | 19.432009 | 2 |
CAACGCA | 4260 | 0.0 | 18.953766 | 5 |
TCAACGC | 4240 | 0.0 | 18.932364 | 4 |
GAGTACA | 3540 | 0.0 | 18.923908 | 1 |
GCTACAC | 780 | 0.0 | 18.877787 | 3 |
ACATGGG | 4405 | 0.0 | 18.870184 | 3 |
GTATAGT | 505 | 0.0 | 18.816273 | 1 |
TAGACAG | 1100 | 0.0 | 18.566582 | 5 |
AACGCAG | 4405 | 0.0 | 18.54551 | 6 |
TAATACT | 1350 | 0.0 | 18.29589 | 4 |
TCCGTAG | 130 | 0.007554142 | 18.273495 | 1 |
ATCAACG | 4420 | 0.0 | 18.268826 | 3 |
CCTAGAC | 600 | 0.0 | 18.207928 | 3 |
TTAATAC | 1080 | 0.0 | 18.032007 | 3 |