Basic Statistics
Measure | Value |
---|---|
Filename | SRR2031654_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1993848 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ACCGTAC | 115 | 1.2799757E-4 | 24.788986 | 8 |
TATAACG | 165 | 2.396433E-6 | 23.068693 | 2 |
GTATCAA | 4635 | 0.0 | 22.915606 | 1 |
GTACATG | 4330 | 0.0 | 22.659773 | 1 |
TCAACGC | 4580 | 0.0 | 22.415398 | 4 |
ATCAACG | 4675 | 0.0 | 22.162674 | 3 |
CAACGCA | 4620 | 0.0 | 22.118448 | 5 |
AACGCAG | 4720 | 0.0 | 21.842445 | 6 |
ACATGGG | 4110 | 0.0 | 21.39327 | 3 |
CGTAGCA | 140 | 4.799241E-4 | 20.391077 | 2 |
TACATGG | 4720 | 0.0 | 20.261473 | 2 |
GCACCGT | 380 | 0.0 | 20.004143 | 6 |
ACGCAGA | 5140 | 0.0 | 19.871794 | 7 |
CGCAGAG | 5230 | 0.0 | 19.350103 | 8 |
GTATTAC | 740 | 0.0 | 19.309265 | 1 |
TATCAAC | 5505 | 0.0 | 19.014387 | 2 |
GTATTCG | 160 | 0.0011698661 | 17.861073 | 1 |
GTAATAC | 735 | 0.0 | 17.459173 | 3 |
GGTATCA | 3520 | 0.0 | 17.455137 | 1 |
GTATAGG | 780 | 0.0 | 17.097776 | 1 |