Basic Statistics
Measure | Value |
---|---|
Filename | SRR2031636_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2738401 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ACTTAATACTTCAGTACTTCTAGCATCAGGTGTTTCAATTACATGAGCTC | 3889 | 0.14201718448101647 | No Hit |
GCCTTATAGAAGGTAAACGAAACCACATAAATCAAGCCCTACTAATTACC | 3285 | 0.11996051710468994 | No Hit |
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT | 3163 | 0.11550536243596173 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGAATCG | 80 | 1.8343253E-6 | 23.79046 | 60-61 |
CGATACG | 70 | 1.8099052E-5 | 23.70076 | 28-29 |
GTACATG | 7665 | 0.0 | 22.62142 | 1 |
ACATGGG | 7105 | 0.0 | 21.874754 | 3 |
TAATACT | 3225 | 0.0 | 20.044008 | 4 |
TACATGG | 8810 | 0.0 | 18.689974 | 2 |
GTCACGC | 65 | 0.007553543 | 18.27473 | 10-11 |
TCGTACG | 65 | 0.0075547392 | 18.27423 | 88-89 |
GTATTAT | 1735 | 0.0 | 18.120703 | 1 |
AATACCG | 325 | 9.957148E-9 | 17.549845 | 5 |
GTATAGG | 1550 | 0.0 | 17.517567 | 1 |
CGTCCGA | 305 | 0.0 | 17.136305 | 10-11 |
GTATTAC | 1120 | 0.0 | 17.012674 | 1 |
GTAATAC | 1015 | 0.0 | 16.857609 | 3 |
GGTATCA | 7510 | 0.0 | 16.808794 | 1 |
CATGGGG | 3145 | 0.0 | 16.775587 | 4 |
ACCTGGG | 1465 | 0.0 | 16.545963 | 3 |
CTCGTCC | 610 | 0.0 | 16.35798 | 9 |
TCGTCCG | 305 | 0.0 | 16.357382 | 10-11 |
GTATATA | 3185 | 0.0 | 16.302256 | 1 |