Basic Statistics
Measure | Value |
---|---|
Filename | SRR2031568_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 665886 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2108 | 0.3165707042947291 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1751 | 0.26295792372868626 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 845 | 0.12689859825856079 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 1050 | 0.0 | 53.833336 | 1 |
GTATCAA | 1950 | 0.0 | 44.576923 | 1 |
TCAACGC | 2155 | 0.0 | 38.793503 | 4 |
ATCAACG | 2215 | 0.0 | 37.528217 | 3 |
CAACGCA | 2235 | 0.0 | 37.404922 | 5 |
TATCAAC | 2295 | 0.0 | 36.633987 | 2 |
AACGCAG | 2335 | 0.0 | 36.006424 | 6 |
ACGCAGA | 2625 | 0.0 | 32.028572 | 7 |
CGCAGAG | 2690 | 0.0 | 31.254646 | 8 |
ACGTCGT | 35 | 0.008392041 | 27.142859 | 22-23 |
GCAGAGT | 3110 | 0.0 | 27.033762 | 9 |
GTACATG | 2070 | 0.0 | 25.471014 | 1 |
GTATAGC | 360 | 0.0 | 25.069445 | 1 |
GTGTACG | 95 | 0.0012260128 | 25.0 | 1 |
GTGGTAT | 535 | 0.0 | 24.859816 | 1 |
TACATGG | 2090 | 0.0 | 24.318182 | 2 |
TGGTATC | 460 | 0.0 | 23.749998 | 2 |
CAGAGTA | 2925 | 0.0 | 23.141026 | 10-11 |
ACATGGG | 2165 | 0.0 | 23.036951 | 3 |
GAGTACT | 1950 | 0.0 | 22.897436 | 12-13 |