Basic Statistics
Measure | Value |
---|---|
Filename | SRR2031552_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1265805 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTTATACACATCTCCGAGCCCACGAGACGTAGAGGAATCTCGTATGCCGT | 3098 | 0.2447454386734134 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2500 | 0.19750277491398754 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1789 | 0.1413329857284495 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 1505 | 0.0 | 51.191166 | 1 |
GTATCAA | 3040 | 0.0 | 43.17696 | 1 |
TCAACGC | 3315 | 0.0 | 38.54368 | 4 |
ATCAACG | 3345 | 0.0 | 38.339996 | 3 |
AACGCAG | 3380 | 0.0 | 38.08351 | 6 |
CAACGCA | 3370 | 0.0 | 37.914627 | 5 |
ACGCAGA | 3805 | 0.0 | 33.704933 | 7 |
CGCAGAG | 3795 | 0.0 | 33.418262 | 8 |
TATCAAC | 3935 | 0.0 | 32.95356 | 2 |
TATACCG | 90 | 2.4135046E-5 | 31.665997 | 5 |
GCAGAGT | 4555 | 0.0 | 27.529604 | 9 |
CGTATAC | 145 | 7.8061566E-7 | 26.23847 | 1 |
AGAGTAC | 4155 | 0.0 | 22.349106 | 10-11 |
GTACATG | 3455 | 0.0 | 22.298903 | 1 |
ACATGGG | 3200 | 0.0 | 21.226112 | 3 |
GAGTACT | 2810 | 0.0 | 21.044928 | 12-13 |
CAGAGTA | 4500 | 0.0 | 20.952333 | 10-11 |
CATGGGG | 1875 | 0.0 | 20.519566 | 4 |
GTATAAA | 1320 | 0.0 | 20.175795 | 1 |
TAATACT | 1245 | 0.0 | 19.838936 | 4 |