Basic Statistics
Measure | Value |
---|---|
Filename | SRR2031525_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1286353 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5433 | 0.4223568491697069 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3782 | 0.2940094981704089 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2251 | 0.1749908462140641 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 2090 | 0.0 | 62.045452 | 1 |
GTATCAA | 4545 | 0.0 | 50.68757 | 1 |
TCAACGC | 5810 | 0.0 | 39.079174 | 4 |
ATCAACG | 5850 | 0.0 | 38.89316 | 3 |
CAACGCA | 5915 | 0.0 | 38.385464 | 5 |
TATCAAC | 5975 | 0.0 | 38.0795 | 2 |
AACGCAG | 6045 | 0.0 | 37.638546 | 6 |
ACGCAGA | 6730 | 0.0 | 33.737 | 7 |
CGCAGAG | 6770 | 0.0 | 33.397343 | 8 |
GCAGAGT | 7510 | 0.0 | 29.600533 | 9 |
GTACATG | 5740 | 0.0 | 29.377178 | 1 |
TACATGG | 5805 | 0.0 | 28.229973 | 2 |
ACATGGG | 5610 | 0.0 | 27.602497 | 3 |
TATGCCG | 70 | 0.008391935 | 27.142859 | 5 |
CGTATAG | 150 | 1.0602762E-6 | 25.333334 | 1 |
CATGGGG | 2850 | 0.0 | 24.0 | 4 |
AGAGTAC | 7065 | 0.0 | 23.430645 | 10-11 |
GAGTACT | 4750 | 0.0 | 23.3 | 12-13 |
CAGAGTA | 7300 | 0.0 | 23.294521 | 10-11 |
CATGGGA | 2900 | 0.0 | 22.275862 | 4 |