Basic Statistics
Measure | Value |
---|---|
Filename | SRR2031511_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1346551 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1863 | 0.13835346748842042 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1377 | 0.10226125857839771 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 1380 | 0.0 | 48.532608 | 1 |
GTATCAA | 2535 | 0.0 | 44.59566 | 1 |
TCAACGC | 2860 | 0.0 | 37.867134 | 4 |
CAACGCA | 3030 | 0.0 | 35.89934 | 5 |
ATCAACG | 3020 | 0.0 | 35.860928 | 3 |
AACGCAG | 3195 | 0.0 | 34.78873 | 6 |
TATCAAC | 3390 | 0.0 | 31.946901 | 2 |
ACGCAGA | 3575 | 0.0 | 30.958042 | 7 |
CGCAGAG | 3605 | 0.0 | 30.568655 | 8 |
GTACATG | 3770 | 0.0 | 28.22281 | 1 |
TACATGG | 3810 | 0.0 | 27.677166 | 2 |
ACATGGG | 3800 | 0.0 | 26.625 | 3 |
TATACCG | 90 | 8.9483487E-4 | 26.388887 | 5 |
CATGGGG | 2610 | 0.0 | 24.02299 | 4 |
GCAGAGT | 4535 | 0.0 | 23.880926 | 9 |
AGAGTAC | 3815 | 0.0 | 21.851244 | 10-11 |
CAGAGTA | 4150 | 0.0 | 20.087349 | 10-11 |
GGACCGT | 120 | 0.004763917 | 19.791668 | 6 |
GAGTACT | 2485 | 0.0 | 19.496983 | 12-13 |
AGTACTT | 2805 | 0.0 | 18.966133 | 12-13 |