Basic Statistics
Measure | Value |
---|---|
Filename | SRR2031483_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1004303 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1774 | 0.17663991843099144 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1271 | 0.1265554319762064 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 1070 | 0.0 | 53.687244 | 1 |
GTATCAA | 2130 | 0.0 | 45.246597 | 1 |
TCAACGC | 2565 | 0.0 | 36.469936 | 4 |
ATCAACG | 2585 | 0.0 | 36.371464 | 3 |
CAACGCA | 2610 | 0.0 | 35.659206 | 5 |
TATCAAC | 2695 | 0.0 | 35.589924 | 2 |
AACGCAG | 2760 | 0.0 | 33.704403 | 6 |
GTACATG | 3650 | 0.0 | 29.005577 | 1 |
ACGCAGA | 3200 | 0.0 | 28.773413 | 7 |
GTATACG | 85 | 6.4259634E-4 | 27.926764 | 1 |
TACATGG | 3795 | 0.0 | 27.9015 | 2 |
CGCAGAG | 3325 | 0.0 | 27.548965 | 8 |
ACATGGG | 3720 | 0.0 | 27.31662 | 3 |
GACCCGT | 70 | 0.008424495 | 27.120745 | 6 |
AACCGTG | 185 | 2.561028E-7 | 23.089281 | 7 |
GCAGAGT | 3935 | 0.0 | 23.037125 | 9 |
CATGGGG | 2170 | 0.0 | 22.320122 | 4 |
GTACTAA | 150 | 3.044821E-5 | 22.155233 | 1 |
GTACCGT | 200 | 5.427064E-7 | 21.357586 | 6 |
GAACCGT | 135 | 3.8164266E-4 | 21.09391 | 6 |