Basic Statistics
Measure | Value |
---|---|
Filename | SRR2031481_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1381723 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2244 | 0.1624059236185545 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1658 | 0.11999510755773769 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 1325 | 0.0 | 53.36742 | 1 |
GTATCAA | 2610 | 0.0 | 44.366497 | 1 |
TCAACGC | 3080 | 0.0 | 36.835213 | 4 |
ATCAACG | 3080 | 0.0 | 36.68109 | 3 |
CAACGCA | 3135 | 0.0 | 36.188984 | 5 |
AACGCAG | 3325 | 0.0 | 34.39286 | 6 |
TATCAAC | 3340 | 0.0 | 34.107452 | 2 |
ACGCAGA | 3770 | 0.0 | 30.20736 | 7 |
CGCAGAG | 3990 | 0.0 | 28.541794 | 8 |
TACATGG | 3815 | 0.0 | 24.386307 | 2 |
GTACATG | 4025 | 0.0 | 24.170956 | 1 |
ACATGGG | 3845 | 0.0 | 23.703959 | 3 |
GCAGAGT | 4845 | 0.0 | 23.70088 | 9 |
AGAGTAC | 4220 | 0.0 | 20.464533 | 10-11 |
GTATAGT | 475 | 0.0 | 19.982151 | 1 |
GAGTACT | 2620 | 0.0 | 19.831507 | 12-13 |
CAGAGTA | 4535 | 0.0 | 19.409283 | 10-11 |
GTATAGG | 455 | 0.0 | 18.774439 | 1 |
TATACAG | 925 | 0.0 | 17.961489 | 5 |
GTACTTT | 3015 | 0.0 | 17.703894 | 14-15 |