Basic Statistics
Measure | Value |
---|---|
Filename | SRR2031477_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1128368 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2214 | 0.1962125831289083 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1741 | 0.15429363470073593 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 1340 | 0.0 | 57.46553 | 1 |
GTATCAA | 2595 | 0.0 | 43.41184 | 1 |
TCAACGC | 2980 | 0.0 | 37.45435 | 4 |
CAACGCA | 3045 | 0.0 | 36.654835 | 5 |
ATCAACG | 3050 | 0.0 | 36.59474 | 3 |
AACGCAG | 3180 | 0.0 | 35.24809 | 6 |
TATCAAC | 3210 | 0.0 | 34.918667 | 2 |
ACGCAGA | 3670 | 0.0 | 30.28311 | 7 |
CGCAGAG | 3750 | 0.0 | 29.890377 | 8 |
GCAGAGT | 4365 | 0.0 | 25.35259 | 9 |
TACATGG | 3540 | 0.0 | 23.747652 | 2 |
GTACATG | 3820 | 0.0 | 22.771147 | 1 |
GAGTACT | 2370 | 0.0 | 22.647448 | 12-13 |
ACATGGG | 3565 | 0.0 | 21.582718 | 3 |
CAGAGTA | 4155 | 0.0 | 21.432898 | 10-11 |
GTACTTT | 2520 | 0.0 | 20.925186 | 14-15 |
AGAGTAC | 3890 | 0.0 | 20.878397 | 10-11 |
GAGTACA | 2625 | 0.0 | 20.099758 | 1 |
CATGGGG | 2360 | 0.0 | 19.320124 | 4 |
GTATAAC | 300 | 3.6834535E-9 | 19.013287 | 1 |