Basic Statistics
Measure | Value |
---|---|
Filename | SRR2031433_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1644084 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3214 | 0.1954887949764124 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2300 | 0.13989552845231754 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 1910 | 0.0 | 51.279503 | 1 |
GTATCAA | 3615 | 0.0 | 45.638477 | 1 |
TCAACGC | 4330 | 0.0 | 37.293957 | 4 |
ATCAACG | 4370 | 0.0 | 36.952595 | 3 |
CAACGCA | 4400 | 0.0 | 36.916527 | 5 |
TATCAAC | 4625 | 0.0 | 35.325977 | 2 |
AACGCAG | 4615 | 0.0 | 35.196693 | 6 |
ACGCAGA | 5110 | 0.0 | 31.694284 | 7 |
CGCAGAG | 5295 | 0.0 | 30.317833 | 8 |
CGATAGC | 90 | 8.954749E-4 | 26.386084 | 4 |
TACATGG | 5085 | 0.0 | 25.68557 | 2 |
GCAGAGT | 6295 | 0.0 | 24.973516 | 9 |
ACATGGG | 5220 | 0.0 | 24.930298 | 3 |
GTACATG | 5310 | 0.0 | 24.712948 | 1 |
TACCGTA | 155 | 1.4125599E-6 | 24.513523 | 7 |
GTACCGT | 215 | 1.6661943E-9 | 24.299744 | 6 |
GTATAGG | 450 | 0.0 | 22.18793 | 1 |
AGAGTAC | 5360 | 0.0 | 22.063887 | 10-11 |
CATGGGG | 3850 | 0.0 | 21.588614 | 4 |
CAGAGTA | 5915 | 0.0 | 20.555717 | 10-11 |