Basic Statistics
Measure | Value |
---|---|
Filename | SRR2031427_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1187286 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1538 | 0.12953913378916285 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 1145 | 0.0 | 46.48852 | 1 |
GTATCAA | 2100 | 0.0 | 43.905167 | 1 |
TCAACGC | 2305 | 0.0 | 38.740387 | 4 |
ATCAACG | 2355 | 0.0 | 37.917877 | 3 |
CAACGCA | 2380 | 0.0 | 37.519577 | 5 |
AACGCAG | 2445 | 0.0 | 36.910656 | 6 |
TATCAAC | 2695 | 0.0 | 33.310417 | 2 |
ACGCAGA | 2795 | 0.0 | 31.60881 | 7 |
CGCAGAG | 2930 | 0.0 | 29.990326 | 8 |
CGTATAC | 70 | 0.008393239 | 27.141823 | 3 |
GTACATG | 3580 | 0.0 | 26.019936 | 1 |
ACATGGG | 3525 | 0.0 | 24.254395 | 3 |
GCAGAGT | 3620 | 0.0 | 24.142727 | 9 |
TACATGG | 3895 | 0.0 | 22.682062 | 2 |
GTATACG | 105 | 0.002189234 | 22.631529 | 1 |
CATGGGG | 2125 | 0.0 | 21.458006 | 4 |
AGAGTAC | 3130 | 0.0 | 21.396948 | 10-11 |
GCCGTAC | 140 | 4.853114E-4 | 20.356367 | 8 |
GAGTACA | 2530 | 0.0 | 19.536467 | 1 |
CAGAGTA | 3535 | 0.0 | 18.676798 | 10-11 |