Basic Statistics
Measure | Value |
---|---|
Filename | SRR2031400_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1583357 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1768 | 0.11166148884932457 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 1645 | 0.0 | 51.356716 | 1 |
GTATCAA | 3035 | 0.0 | 42.69206 | 1 |
TCAACGC | 3535 | 0.0 | 36.263405 | 4 |
CAACGCA | 3570 | 0.0 | 35.90788 | 5 |
ATCAACG | 3620 | 0.0 | 35.1496 | 3 |
AACGCAG | 3740 | 0.0 | 34.264866 | 6 |
TATCAAC | 4030 | 0.0 | 31.80921 | 2 |
ACGCAGA | 4295 | 0.0 | 29.947666 | 7 |
CGCAGAG | 4345 | 0.0 | 29.71228 | 8 |
GTACATG | 5435 | 0.0 | 26.45978 | 1 |
TACATGG | 5765 | 0.0 | 24.87149 | 2 |
ACATGGG | 5590 | 0.0 | 24.630907 | 3 |
GCAGAGT | 5345 | 0.0 | 23.974276 | 9 |
CGTATAC | 100 | 0.0016617064 | 23.73084 | 1 |
CATGGGG | 3360 | 0.0 | 22.749968 | 4 |
GTATAGG | 600 | 0.0 | 21.357758 | 1 |
AGAGTAC | 4860 | 0.0 | 20.653969 | 10-11 |
CGTTAGG | 105 | 8.5926877E-7 | 20.363253 | 52-53 |
CAGAGTA | 5155 | 0.0 | 19.748224 | 10-11 |
GTATAGA | 775 | 0.0 | 19.597082 | 1 |