FastQCFastQC Report
Sat 31 Dec 2022
SRR1954868.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954868.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences176832
Sequences flagged as poor quality0
Sequence length51
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT44432.512554288816504No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA8470.47898570394498735No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT7890.44618621064060804No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCC3690.2086726384364821No Hit
CCTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCGTCTTCTGC3420.19340390879478828No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCG2460.13911509229098806No Hit
GAATCTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCGTCTTC2120.11988780311255882No Hit
TGCCAGGGGGAGTTCTCTTTATCACAAACACTTTACATGGACCTTCATGTC2050.11592924357582339No Hit
CTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCGTCTTCTGCT2010.11366720955483171No Hit
AGTTTCGGGGTAGGACATGGAATATGGCAAGAACACTGAATATCATGGAAA1910.10801212450235252No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)