FastQCFastQC Report
Sat 31 Dec 2022
SRR1954867.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954867.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences73094
Sequences flagged as poor quality0
Sequence length51
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT11671.5965742742222344No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3960.5417681341833803No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3230.44189673571018145No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1150.15733165512901195No Hit
CGTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1050.14365064163953264No Hit
TGCCAGAGGGAGTTCTCTTTATCACAAACACTTTACATGGACCTTCATGTC840.11492051331162612No Hit
CGGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT830.11355241196267819No Hit
CCTGTCACTTATACACATCTGACGCGTGAAGCTTCGTATGCCGTCTTCTGC820.11218431061373027No Hit
TTAAACAGGACAATTTCTTACCAGATAAAAAATGAAATTTGCCTCTAGTAT810.11081620926478235No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC740.10123949982214682No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)