FastQCFastQC Report
Sat 31 Dec 2022
SRR1954860.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954860.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438347
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT48841.1141857934467443No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCG15030.3428790433149993No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGC13620.3107127458383427No Hit
GAATCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTC12490.2849340819031498No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT8400.1916290062439118No Hit
CCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTCTGC6910.15763767061255124No Hit
CTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTCTGCT6350.1448624035296238No Hit
GCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTCTGC6330.1444061439909478No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTTGCTTCGT4590.10471156412613751No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)