FastQCFastQC Report
Sat 31 Dec 2022
SRR1954859.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954859.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences187468
Sequences flagged as poor quality0
Sequence length51
%GC39

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT14660.782000128021849No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3810.20323468538630593No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCG3710.1979004416753793No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGC3290.17549661808948727No Hit
GAATCTATCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTC2740.14615827767939063No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1880.1002837817654213No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)