FastQCFastQC Report
Sat 31 Dec 2022
SRR1954847.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954847.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences176017
Sequences flagged as poor quality0
Sequence length51
%GC39

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT13070.7425419135651671No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3920.2227057613753217No Hit
GAATCTATCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTCTTC3420.19429941426112252No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCG2910.1653249402046393No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGC2660.15112176664753973No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2380.13521421226358818No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC1940.11021662680309287No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)