FastQCFastQC Report
Sat 31 Dec 2022
SRR1954841.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954841.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences376183
Sequences flagged as poor quality0
Sequence length51
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT20900.5555806615397293No Hit
GAATCTATCTCTTATACACATCTGACGCTGCCTTGTTCGTATGCCGTCTTC15420.4099068804278769No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCTGCCTTGTTCGTATGCCG14810.393691368296813No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCTGCCTTGTTCGTATGC10210.27141045714452805No Hit
GCTGTCACTTATACACATCTGACGCTGCCTTGTTCGTATGCCGTCTTCTGC4970.1321165496580122No Hit
GAATGAATGTCTCTTATACACATCTGACGCTGCCTTGTTCGTATGCCGTCT4460.11855931820417191No Hit
CTGTCTATTATACACATCTGACGCTGCCTTGTTCGTATGCCGTCTTCTGCT4370.11616686559467067Illumina Single End Adapter 1 (95% over 21bp)
GAATGAACTGTCTCTTATACACATCTGACGCTGCCTTGTTCGTATGCCGTC4300.11430606912061418No Hit
GAACTGACTCTTATACACATCTGACGCTGCCTTGTTCGTATGCCGTCTTCT4010.10659705515666576No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)