FastQCFastQC Report
Sat 31 Dec 2022
SRR1954831.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954831.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences229601
Sequences flagged as poor quality0
Sequence length51
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT14630.6371923467232286No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCTCGTCGATTCGTATGCCG8640.37630498125008166No Hit
GAATCTATCTCTTATACACATCTGACGCTCGTCGATTCGTATGCCGTCTTC6940.3022634918837462No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCTCGTCGATTCGTATGC5730.249563372981825No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4500.19599217773441754No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC3040.13240360451391764No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCGTCGATTCGTATGCCG2550.11106223404950327No Hit
GAATGAATGTCTCTTATACACATCTGACGCTCGTCGATTCGTATGCCGTCT2350.10235147059464025No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)