FastQCFastQC Report
Sat 31 Dec 2022
SRR1954830.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954830.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences595093
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT69561.168892929340456No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGC50280.8449099552506919No Hit
GAATCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTC49160.8260893675442326No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCG47020.7901286017479621No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACAGTTCGT16270.2734026446286547No Hit
GCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTCTGC14460.2429872305673231No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT11890.19980070341946554No Hit
GAATGATCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTC11880.1996326624578007No Hit
GAATGACTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCT11720.19694400707116363No Hit
GAACTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTCT11030.18534918071629142No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCACAGTTCGTCGTA10400.17476260013140804No Hit
GAATAATACGGCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGC8430.1416585306834394No Hit
CTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTCTGCT7860.13208019586854491No Hit
GAATAATACCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCG7810.13123999106022083No Hit
GAATATGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTC6500.10922662508213003No Hit
CCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTCTGC6450.10838642027380593No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCC6090.1023369456538726No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)