FastQCFastQC Report
Sat 31 Dec 2022
SRR1954829.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954829.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences246453
Sequences flagged as poor quality0
Sequence length51
%GC39

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT19070.7737783674777746No Hit
GAATCTATCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTC13540.5493948136155777No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGC11610.4710837360470353No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCG10670.4329425894592478No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5540.22478931074079034No Hit
GAATCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTC4170.16920061837348296No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGC3680.14931853132240225No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCG3330.1351170405716303No Hit
GAATGAACTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTC3220.13065371490710195No Hit
GCTGTCACTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTCTGC3150.12781341675694757No Hit
GAATGAATGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCT2880.11685798103492348No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC2730.11077162785602124No Hit
GAACTGACTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTCT2580.10468527467711897No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)