FastQCFastQC Report
Sat 31 Dec 2022
SRR1954819.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954819.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences361877
Sequences flagged as poor quality0
Sequence length51
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT18710.5170265034804644No Hit
CTGTCTATTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCTGCT6850.18929083638915986Illumina Single End Adapter 1 (95% over 21bp)
GAATCTATCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTC5520.1525380170610456No Hit
GCTGTCACTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCTGC5280.14590592936273927No Hit
CCTGTCACTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCTGC4830.13347076492841492No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCG4340.11993025254437283No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)